Difference between revisions of "Annotation Conf. Call 2019-09-24"

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== GO-CAMs and Annotation Extensions ==
 
== GO-CAMs and Annotation Extensions ==
 
* Update on relations allowed for GO-CAM as specified in ShEx (Shape Expressions)
 
* Update on relations allowed for GO-CAM as specified in ShEx (Shape Expressions)
 +
* Approach:
 +
** Examine relations used in GO
 +
*** Annotations extensions
 +
*** Ontology
 +
** Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology)
 +
** Trying to move towards using only RO relations
  
 
== Ontology Updates and Annotation Reviews ==
 
== Ontology Updates and Annotation Reviews ==

Revision as of 14:53, 22 September 2019

Agenda

October GOC Meeting - Berkeley

Pipeline

  • There have been some glitches with the GOC pipeline.
  • New ontology terms may not be available for use yet.
  • Software team is aware of the issues and working on restoring the pipeline to its regular schedule.
  • Any updates here?

GO-CAMs and Annotation Extensions

  • Update on relations allowed for GO-CAM as specified in ShEx (Shape Expressions)
  • Approach:
    • Examine relations used in GO
      • Annotations extensions
      • Ontology
    • Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology)
    • Trying to move towards using only RO relations

Ontology Updates and Annotation Reviews

Protein multimerization terms

  • How are the reviews going?
  • Next terms up: protein homodimerization, protein heterodimerization (non-IPI evidence codes)

Minutes

  • Present: