Difference between revisions of "Annotation Conf. Call 2019-09-24"

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** Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology)
 
** Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology)
 
** Trying to move towards using only RO relations, using a smaller set of relations to make curation easier (but still maintain accurate representation of the biology)
 
** Trying to move towards using only RO relations, using a smaller set of relations to make curation easier (but still maintain accurate representation of the biology)
 +
*Relations Usage
 +
**Definitely in
 +
**Definitely out
 +
**In, but usage restricted to specific ontology terms and their children
 +
**Out for now (need further discussion)
 
* [https://docs.google.com/spreadsheets/d/1okodOSG7mWgS8ZE8T95XjPr0-9G1vEIkAy2BkipEfRw Biological Process]
 
* [https://docs.google.com/spreadsheets/d/1okodOSG7mWgS8ZE8T95XjPr0-9G1vEIkAy2BkipEfRw Biological Process]
 
* [https://docs.google.com/spreadsheets/d/1DuON03hEfEDDC7_6CCnnR3JcBA4ltQgGFP0otAeMZKs Molecular Function]
 
* [https://docs.google.com/spreadsheets/d/1DuON03hEfEDDC7_6CCnnR3JcBA4ltQgGFP0otAeMZKs Molecular Function]
 
* [https://docs.google.com/spreadsheets/d/17LcW5v4mX18jJjAXfXethJnnI0cTg--PZUGXtV7NWsY Cellular Component]
 
* [https://docs.google.com/spreadsheets/d/17LcW5v4mX18jJjAXfXethJnnI0cTg--PZUGXtV7NWsY Cellular Component]
 
  
 
= Minutes =
 
= Minutes =

Revision as of 12:32, 23 September 2019

Agenda

October GOC Meeting - Berkeley

Pipeline

  • There have been some glitches with the GOC pipeline.
  • New ontology terms may not be available for use yet.
  • Software team is aware of the issues and working on restoring the pipeline to its regular schedule.
  • Any updates here?

GO-CAMs and Annotation Extensions

  • Update on relations allowed for GO-CAM as specified in ShEx (Shape Expressions)
  • Approach:
    • Examine relations used in GO
      • Annotations extensions
      • Ontology
    • Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology)
    • Trying to move towards using only RO relations, using a smaller set of relations to make curation easier (but still maintain accurate representation of the biology)
  • Relations Usage
    • Definitely in
    • Definitely out
    • In, but usage restricted to specific ontology terms and their children
    • Out for now (need further discussion)
  • Biological Process
  • Molecular Function
  • Cellular Component

Minutes

  • Present: