Annotation Conf. Call 2019-09-24

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Revision as of 11:32, 23 September 2019 by Vanaukenk (talk | contribs) (GO-CAMs and Annotation Extensions)

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Agenda

October GOC Meeting - Berkeley

Pipeline

  • There have been some glitches with the GOC pipeline.
  • New ontology terms may not be available for use yet.
  • Software team is aware of the issues and working on restoring the pipeline to its regular schedule.
  • Any updates here?

GO-CAMs and Annotation Extensions

  • Update on relations allowed for GO-CAM as specified in ShEx (Shape Expressions)
  • Approach:
    • Examine relations used in GO
      • Annotations extensions
      • Ontology
    • Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology)
    • Trying to move towards using only RO relations, using a smaller set of relations to make curation easier (but still maintain accurate representation of the biology)
  • Relations Usage
    • Definitely in
    • Definitely out
    • In, but usage restricted to specific ontology terms and their children
    • Out for now (need further discussion)
  • Biological Process
  • Molecular Function
  • Cellular Component

Minutes

  • Present: