Annotation Conf. Call 2020-01-21: Difference between revisions

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== Pipeline ==
== Pipeline ==
*gp2protein files
*gp2protein, gp2rna, gp_unlocalized files
**plan is to [https://github.com/geneontology/go-site/issues/400 retire these from GOC], but want to double-check if there is any use for these files that would require GOC to keep them
**plan is to [https://github.com/geneontology/go-site/issues/400 retire these from GOC], but want to double-check if there is any use for these files that would require GOC to keep them
*Announcement sent to go-friends, 2020-01-16
*Announcement sent to go-friends, 2020-01-16

Revision as of 14:02, 20 January 2020

Agenda and Minutes

  • Present:

Pipeline

  • gp2protein, gp2rna, gp_unlocalized files
    • plan is to retire these from GOC, but want to double-check if there is any use for these files that would require GOC to keep them
  • Announcement sent to go-friends, 2020-01-16
  • Summary of ticket:
    • the GOC pipeline is not using gp2protein files for any data processing
    • a gene/gene product identifier mapping file would be of use to the broader scientific community, but the exact file format and who should produce and distribute it, remains to be determined
    • form a working group of representatives from the Alliance and other databases to develop a common standard here?
      • GO's gpi file format might be a good place to start

Noctua Form 2.0

MGI and WB Imports into Noctua

  • MGI and WB have addressed any remaining annotation errors
  • Next steps:
    • Incorporate more term-specific relation patterns into the validation schema (ShEx)
    • Model annotation history tracking and import
      • Planned f2f meeting of MGI, WB, and GO in February
  • ACTION: Review annotation history requirements for groups (again) to make sure we're accommodating everyone's needs