Annotation Conf. Call 2020-01-21: Difference between revisions
Jump to navigation
Jump to search
mNo edit summary |
|||
| Line 15: | Line 15: | ||
== Noctua Form 2.0 == | == Noctua Form 2.0 == | ||
* | *Software updates made to ensure correct environment of all components | ||
*Additional updates: | |||
**Entity identifiers now displayed along with labels (particularly helpful when annotating gene product isoforms) | |||
**Causal relations decision tree (available via Connect on the Noctua form table) | |||
*Available (SOON!) from [http://noctua.geneontology.org/ Noctua landing page] and workbenches menu on graph editor (NOW) | *Available (SOON!) from [http://noctua.geneontology.org/ Noctua landing page] and workbenches menu on graph editor (NOW) | ||
*[http://wiki.geneontology.org/index.php/Noctua Noctua Manual] | *[http://wiki.geneontology.org/index.php/Noctua Noctua Manual] | ||
*[https://docs.google.com/document/d/1DZu25YKdH_D3Ics5BSmyvN8IGfGlTcCcwQ4HzviZeWM/edit#heading=h.e6msjvy4rdk9 User Guide - Google doc from Berkeley meeting, will be retired] | *[https://docs.google.com/document/d/1DZu25YKdH_D3Ics5BSmyvN8IGfGlTcCcwQ4HzviZeWM/edit#heading=h.e6msjvy4rdk9 User Guide - Google doc from Berkeley meeting, will be retired] | ||
*ACTION: curators should try out the new form, give us feedback; we will continue to update and organize the documentation to try to help with workflow | *ACTION: curators should try out the new form, give us feedback; we will continue to update and organize the documentation to try to help with workflow | ||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] | ||
Revision as of 16:22, 20 January 2020
Agenda and Minutes
- Present:
Pipeline
- gp2protein, gp2rna, gp_unlocalized files
- plan is to retire these from GOC, but want to double-check if there is any use for these files that would require GOC to keep them
- Announcement sent to go-friends, 2020-01-16
- Summary of ticket:
- the GOC pipeline is not using gp2protein files for any data processing
- a gene/gene product identifier mapping file would be of use to the broader scientific community, but the exact file format and who should produce and distribute it, remains to be determined
- form a working group of representatives from the Alliance and other databases to develop a common standard here?
- GO's gpi file format might be a good place to start
Noctua Form 2.0
- Software updates made to ensure correct environment of all components
- Additional updates:
- Entity identifiers now displayed along with labels (particularly helpful when annotating gene product isoforms)
- Causal relations decision tree (available via Connect on the Noctua form table)
- Available (SOON!) from Noctua landing page and workbenches menu on graph editor (NOW)
- Noctua Manual
- User Guide - Google doc from Berkeley meeting, will be retired
- ACTION: curators should try out the new form, give us feedback; we will continue to update and organize the documentation to try to help with workflow