Annotation Conf. Call 2020-06-09: Difference between revisions

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== GAF 2.2 and GPAD/GPI 2.0 ==
== GAF 2.2 and GPAD/GPI 2.0 ==
* Check in to see if there is any additional feedback from groups
* Check in to see if there is any additional feedback from groups
* Naming: we won't be changing anything about naming the GAF files, but will need to communicate to users what the change is, i.e. the qualifier field is now mandatory and allowed values have increased
* There will be a check for the actual relation label used and non-compliant annotations will be flagged/removed - need to confirm what the decision will be
* Wrt the timing and synchronicity of the GAF 2.2 and GPAD/GPI 2.0 changes, we will try to allow a period between the GOC release and when the new files are ingested so we can address any issues before the next release
* Groups will have to account for some possible asynchronicity in managing their local imports, but the file format should be in the header of each file so the expected format can be dealt with there
* Berkeley will have parsing scripts available to share and can otherwise assist in helping groups with the transition


== Post-meeting action items ==
== Post-meeting action items ==

Revision as of 11:43, 9 June 2020

Agenda and Minutes

Zoom Meeting Passwords

  • Meetings now have passwords incorporated into the URL
  • Please email Kimberly or Suzi if you happen upon a URL without a password

GAF 2.2 and GPAD/GPI 2.0

  • Check in to see if there is any additional feedback from groups
  • Naming: we won't be changing anything about naming the GAF files, but will need to communicate to users what the change is, i.e. the qualifier field is now mandatory and allowed values have increased
  • There will be a check for the actual relation label used and non-compliant annotations will be flagged/removed - need to confirm what the decision will be
  • Wrt the timing and synchronicity of the GAF 2.2 and GPAD/GPI 2.0 changes, we will try to allow a period between the GOC release and when the new files are ingested so we can address any issues before the next release
  • Groups will have to account for some possible asynchronicity in managing their local imports, but the file format should be in the header of each file so the expected format can be dealt with there
  • Berkeley will have parsing scripts available to share and can otherwise assist in helping groups with the transition

Post-meeting action items

  • Transcription annotation review
  • Use of 'contributes to'

MOD imports into Noctua

  • Working on GPAD 2.0 files
  • Working on modeling annotation metadata, comments

Attendance

  • On call: Colin, David, Dmitry, Edith, Giulia, Helen, Judy, Karen, Kimberly, Laurent-Philippe, Li, Mary, Midori, Pascale, Petra, Rob, Ruth, Seth, Stacia, Stan, Tanya