Annotation Conf. Call 2020-10-20: Difference between revisions
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= Agenda and Minutes = | = Agenda and Minutes = | ||
== Planned site outage and system downtime for Berkeley site == | == Infrastructure == | ||
=== Planned site outage and system downtime for Berkeley site === | |||
* Friday the 23rd, at about 6pm PDT, to Saturday the 24th, at about 6pm PDT. These times are approximate. | * Friday the 23rd, at about 6pm PDT, to Saturday the 24th, at about 6pm PDT. These times are approximate. | ||
* Most services will continue during this downtime, but the following will be unavailable: | * Most services will continue during this downtime, but the following will be unavailable: | ||
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**http://status.geneontology.org | **http://status.geneontology.org | ||
== Tracker summary emails == | === Tracker summary emails === | ||
* https://github.com/geneontology/go-site/issues/1530 | * https://github.com/geneontology/go-site/issues/1530 | ||
* Software team is working on this | * Software team is working on this | ||
== October Consortium Meeting - Follow-Up == | === GAF 2.2 and GPAD/GPI 2.0 === | ||
* Do any groups need help with this? | |||
== Meetings == | |||
=== October Consortium Meeting - Follow-Up === | |||
=== Meeting Survey === | === Meeting Survey === | ||
* Opportunity to give feedback on the meeting - please respond to [https://forms.gle/ZW3G1f4XQPKPofQt8 the survey] by end-of-day Monday, October 19th | * Opportunity to give feedback on the meeting - please respond to [https://forms.gle/ZW3G1f4XQPKPofQt8 the survey] by end-of-day Monday, October 19th | ||
= | === GO-CAM Jamboree === | ||
== GO-CAM Jamboree == | |||
* Dates: Monday, November 16th - Friday, November 20th | * Dates: Monday, November 16th - Friday, November 20th | ||
* Goal: focused discussions on GO-CAM modeling of specific topics to train more curators on making GO-CAM models and assess the time and resources needed to create process-centric GO-CAM models | * Goal: focused discussions on GO-CAM modeling of specific topics to train more curators on making GO-CAM models and assess the time and resources needed to create process-centric GO-CAM models | ||
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* Agenda will be forthcoming | * Agenda will be forthcoming | ||
== GO-CAM Modeling Calls == | === GO-CAM Modeling Calls === | ||
* Reserve annotation call slot on the 2nd and 4th Tuesdays of each month for GO-CAM "office hours" | * Reserve annotation call slot on the 2nd and 4th Tuesdays of each month for GO-CAM "office hours" | ||
* Objective: answer specific questions that curators have about GO-CAM modeling | * Objective: answer specific questions that curators have about GO-CAM modeling | ||
* Submit questions or tickets to [https://docs.google.com/document/d/1_ZIasvb0hhmJ1teEQ-wegvPob5T74-JeV4UGcZn_evE the agenda] by the Friday before the meeting, so we can make best/efficient use of everyone's time on the call | * Submit questions or tickets to [https://docs.google.com/document/d/1_ZIasvb0hhmJ1teEQ-wegvPob5T74-JeV4UGcZn_evE the agenda] by the Friday before the meeting, so we can make best/efficient use of everyone's time on the call | ||
== Annotation Issues == | |||
* Capturing interacting taxon | |||
** https://github.com/geneontology/go-shapes/issues/237 | |||
** https://github.com/geneontology/go-ontology/issues/19693 | |||
* Currently, a second taxa is just captured in a separate field in the GAF or GPAD with no relation. | |||
* Proposal: capture dual taxon information using the annotation extension field and a 'has input' relation | |||
* Questions: | |||
** Does everyone who uses the existing | |||
= Attendance = | |||
*On call: | |||
[[Category:Annotation Working Group]] | |||
= Attendance = | = Attendance = |
Revision as of 13:54, 19 October 2020
Agenda and Minutes
Infrastructure
Planned site outage and system downtime for Berkeley site
- Friday the 23rd, at about 6pm PDT, to Saturday the 24th, at about 6pm PDT. These times are approximate.
- Most services will continue during this downtime, but the following will be unavailable:
- Noctua (production and development)
- GO-CAM site (latest models component)
- RDF endpoint
- Noctua curators will need to save any work they wish to be preserved before the scheduled downtime.
- The current status of all of the main GO systems can be found at:
Tracker summary emails
- https://github.com/geneontology/go-site/issues/1530
- Software team is working on this
GAF 2.2 and GPAD/GPI 2.0
- Do any groups need help with this?
Meetings
October Consortium Meeting - Follow-Up
Meeting Survey
- Opportunity to give feedback on the meeting - please respond to the survey by end-of-day Monday, October 19th
GO-CAM Jamboree
- Dates: Monday, November 16th - Friday, November 20th
- Goal: focused discussions on GO-CAM modeling of specific topics to train more curators on making GO-CAM models and assess the time and resources needed to create process-centric GO-CAM models
- Format will be similar to transcription workshop and May GOC meeting, i.e. 1/2-day sessions of presentations, annotation, discussion, breakout rooms
- Ideally, we'd like to have a representative from each group (although it wouldn't have to be the same person every day)
- Doodle poll
- Google spreadsheet for suggesting biological processes to model
- Please fill out Doodle poll and spreadsheet if you'd like to attend
- Agenda will be forthcoming
GO-CAM Modeling Calls
- Reserve annotation call slot on the 2nd and 4th Tuesdays of each month for GO-CAM "office hours"
- Objective: answer specific questions that curators have about GO-CAM modeling
- Submit questions or tickets to the agenda by the Friday before the meeting, so we can make best/efficient use of everyone's time on the call
Annotation Issues
- Capturing interacting taxon
- Currently, a second taxa is just captured in a separate field in the GAF or GPAD with no relation.
- Proposal: capture dual taxon information using the annotation extension field and a 'has input' relation
- Questions:
- Does everyone who uses the existing
Attendance
- On call:
Attendance
- On call: