Annotation Conf. Call 2020-10-20: Difference between revisions
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= Attendance = | = Attendance = | ||
*On call: Antonia, Birgit, Chris M, David, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Michele, Noemi, Pascale, Patrick M, Penelope, Petra, Rob, Sabrina, Stacia, Seth, Suzi, Val | *On call: Antonia, Birgit, Chris M, Colin, David, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Mary K, Michele, Midori, Noemi, Pascale, Patrick M, Penelope, Petra, Rob N, Robert D, Sabrina, Stacia, Seth, Suzi, Val | ||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] |
Revision as of 12:14, 20 October 2020
Agenda and Minutes
Infrastructure
Planned site outage and system downtime for Berkeley site
- Friday the 23rd, at about 6pm PDT, to Saturday the 24th, at about 6pm PDT. These times are approximate.
- Most services will continue during this downtime, but the following will be unavailable:
- Noctua (production and development)
- GO-CAM site (latest models component)
- RDF endpoint
- Noctua curators will need to save any work they wish to be preserved before the scheduled downtime.
- The current status of all of the main GO systems can be found at:
Tracker summary emails
- https://github.com/geneontology/go-site/issues/1530
- Software team is working on this
GAF 2.2 and GPAD/GPI 2.0
- Do any groups need help with this?
Meetings
October Consortium Meeting - Follow-Up
Meeting Survey
- Opportunity to give feedback on the meeting - please respond to the survey by end-of-day Tuesday, October 20th (that's today)
Action Items and Working Groups
- Review with managers, but it would still be good to gauge interest
- ACTION ITEMS/Future breakouts/projects
GO-CAM Jamboree
- Dates: Monday, November 16th - Friday, November 20th
- Goal: focused discussions on GO-CAM modeling of specific topics to train more curators on making GO-CAM models and assess the time and resources needed to create process-centric GO-CAM models
- Format will be similar to transcription workshop and May GOC meeting, i.e. 1/2-day sessions of presentations, annotation, discussion, breakout rooms
- Ideally, we'd like to have a representative from each group (although it wouldn't have to be the same person every day)
- Doodle poll
- Google spreadsheet for suggesting biological processes to model
- Please fill out Doodle poll and spreadsheet if you'd like to attend
- Agenda will be forthcoming
GO-CAM Modeling Calls
- Reserve annotation call slot on the 2nd and 4th Tuesdays of each month for GO-CAM "office hours"
- Objective: answer specific questions that curators have about GO-CAM modeling
- Submit questions or tickets to the agenda by the Friday before the meeting, so we can make best/efficient use of everyone's time on the call
Annotation Issues
Capturing interacting taxon
- Currently, a second taxa is just captured in a separate field in the GAF (Taxon, pipe separated when more than one) or GPAD (Interacting taxon) with no relation.
- Proposal: capture dual taxon information using the annotation extension field and a 'has input' relation
- Questions:
- Does everyone who uses the existing Taxon or Interacting taxon fields for dual taxon annotations also use annotation extensions?
- Would this apply to all children of interspecies interaction between organisms?
Attendance
- On call: Antonia, Birgit, Chris M, Colin, David, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Mary K, Michele, Midori, Noemi, Pascale, Patrick M, Penelope, Petra, Rob N, Robert D, Sabrina, Stacia, Seth, Suzi, Val