Annotation Conf. Call 2021-03-16: Difference between revisions
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* On call: Colin, David, Debby, Dmitry, Dustin, Edith, Gene, Giulia, Harold, Helen, Judy, Karen, Kimberly, Malcolm, Midori, Pascale, Petra, Raymond, Rob, Sabrina, Seth, Suzi, Tanya | * On call: Birgit, Colin, David, Debby, Dmitry, Dustin, Edith, Gene, Giulia, Harold, Helen, Judy, Karen, Kimberly, Malcolm, Midori, Pascale, Petra, Raymond, Rob, Sabrina, Seth, Suzi, Tanya | ||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] |
Revision as of 11:29, 16 March 2021
Agenda and Minutes
GOC Meetings, Other Announcements
May Consortium Meeting
- Virtual Consortium Meeting -Tuesday May 4th - Friday May 7th (note shift forward by one day)
- Agenda/Minutes - please suggest topics for discussion and/or breakout groups
GO-CAM Office Hours
2nd Full Week of Month - no GO calls
Noctua Outages
- April, weekends of 9th and 23rd
- Planned LBL outages
GAF 2.2
- The pipeline has now switched over to consuming and generating GAF2.2 files for snapshot releases
- Last version of snapshot ran on Sunday, March 14th
- Implemented two new GO rules (59 and 61) wrt transitioning to GAF2.2
- Determine where each group is at wrt the GAF source file they provide to GO, any remaining issues to address
- As of 2021-03-16:
- dictyBase - GAF2.2
- FlyBase - GAF2.2
- MGI - GAF2.2
- PAINT - GAF2.2
- PomBase - GAF2.2
- Reactome - GAF2.2 is coming
- RGD - GAF2.2
- SGD - GAF2.2
- TAIR - GAF2.2 is coming
- UniProt GOA - GAF2.2
- WB - GAF2.2
- Xenbase - still working on process for getting full GAF2.2 file for GOC; have stub GAF2.2 file with everything from GOA
- ZFIN - GAF2.2
- As of 2021-03-16:
- Noctua-derived GPAD files will also be subject to GO rules so we can repair existing CC relations
- Will work next update Noctua form and existing annotations
- Report any issues on github ticket
- For sample testing, see Google spreadsheet in Release checks
Slack
- Use Slack as a communication tool for GOC
- Organized into "channels"
- When to use Slack vs github
Ontology Editors Jamboree
- A few tickets of particular note for annotators:
- https://github.com/geneontology/go-ontology/issues/19082 NTR G protein activity
- Curators need to move annotations?
- https://github.com/geneontology/go-ontology/issues/20864 - possible merge or obsoletion of small G protein signal transduction (747 EXP)
- Actions for curators?
- https://github.com/geneontology/go-ontology/issues/19082 NTR G protein activity
Attendance
- On call: Birgit, Colin, David, Debby, Dmitry, Dustin, Edith, Gene, Giulia, Harold, Helen, Judy, Karen, Kimberly, Malcolm, Midori, Pascale, Petra, Raymond, Rob, Sabrina, Seth, Suzi, Tanya