Annotation Conf. Call 2021-11-16: Difference between revisions
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* On call: Antonia, Bob, David, Dmitry, Dustin, Edith, Giulia, Harold, Kimberly, Li, Malcolm, Midori, Pascale, Patrick, Petra, Raymond, Rob, Ruth, Seth, Suzi, Tanya | * On call: Antonia, Bob, David, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Kimberly, Li, Malcolm, Midori, Pascale, Patrick, Petra, Raymond, Rob, Ruth, Seth, Suzi, Tanya | ||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] |
Revision as of 12:05, 16 November 2021
Agenda and Minutes
Meetings and Announcements
Noctua Maintenance Outage - Thursday, November 18th
Generic GO BP Slim Updates
- Update from Pascale
- https://github.com/geneontology/go-ontology/issues/22294
Annotation Issues
Annotation Extension Relations
Further Discussion of 'has input' and 'has output'
- Capturing metal ions as inputs and outputs
- GO classes using 'has input' or 'has output' in extensions
- Metalloenzymes
- Metal-dependent binding
- Sensor activity
- Channels/transporters/transport
- Other BP
- Response to....
- Homeostasis
- Chemotaxis
AmiGO: Change default closure to is and a_part_of and remove regulates
https://github.com/geneontology/amigo/issues/620 Justification is that this would align AmiGO behavior with Panther and QuickGO; more consistent for users
Attendance
- On call: Antonia, Bob, David, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Kimberly, Li, Malcolm, Midori, Pascale, Patrick, Petra, Raymond, Rob, Ruth, Seth, Suzi, Tanya