Annotation Conf. Call 2021-11-16

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Agenda and Minutes

Meetings and Announcements

Noctua Maintenance Outage - Thursday, November 18th

Generic GO BP Slim Updates

Annotation Issues

Annotation Extension Relations

Further Discussion of 'has input' and 'has output'

  • Capturing metal ions as inputs and outputs
  • GO classes using 'has input' or 'has output' in extensions
    • Metalloenzymes
    • Metal-dependent binding
    • Sensor activity
    • Channels/transporters/transport
    • Other BP
      • Response to....
      • Homeostasis
      • Chemotaxis


AmiGO: Change default closure to is and a_part_of and remove regulates

https://github.com/geneontology/amigo/issues/620 Justification is that this would align AmiGO behavior with Panther and QuickGO; more consistent for users

Attendance

  • On call: Antonia, Bob, David, Dmitry, Edith, Giulia, Harold, Kimberly, Li, Malcolm, Midori, Pascale, Patrick, Petra, Raymond, Rob, Ruth, Suzi, Tanya