Annotation Conf. Call April 23, 2013

• Apoptosis curation manual and re-curation effort
• Jenkins checks
• Update on GOC meeting

Agenda

Apoptosis curation

Curation manual can be found here: http://wiki.geneontology.org/index.php/Apoptosis_Curation_Manual

Discussion

• If you have questions about any of the new terms, please post them on SourceForge.
• Davids question about a paper (Pablo, Paola please add this example to the manual)
• Karen- it will be useful to add some of the common apoptotic drug targets. Pablo will provide a link to a good review in the manual.

Jenkins

http://build.berkeleybop.org/

GOC meeting

• Minutes are available on Google docs (link available from the GOC wiki- http://gocwiki.geneontology.org/index.php/2013_Cambridge_GOC_Meeting_Agenda).
• AmiGO 2 (http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo) is ready for testing. Please report your bugs at: http://github.com/kltm/amigo/issues or send them to Seth/Chris
• New website is being worked on (check the new logo). http://beta.geneontology.org
• Galaxy environment has been set up (http://galaxy.berkeleybop.org/). It will be integrated with the new website.
• Annotation extension column (propagating/inferring)
• Misused terms (http://gocwiki.geneontology.org/index.php/Misused_terms - we will be going through them in future annotation calls)
• discussion on read-out vs actual involvement in the process
• Create Orcid account http://orcid.org/ (for Termgenie login) and send your username to Jane
• Cell cycle changes