Exists during: Difference between revisions
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Also see the [http://fafner.stanford.edu/pipermail/go-discuss/2011-March/005560.html go-discuss mailing list] for more information. | Also see the [http://fafner.stanford.edu/pipermail/go-discuss/2011-March/005560.html go-discuss mailing list] for more information. | ||
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[[Category:relations]] | [[Category:relations]] | ||
[[Category:annotation extension]] | [[Category:annotation extension]] |
Revision as of 09:53, 1 August 2012
Definition
c exists_during p if and only if the temporal extent bounded by the start and end of c is part_of the temporal extent of p.
Child terms
- None.
Scope of use
Domain
BFO:0000004 ! independent continuant (Cellular Component)
Range
BFO:0000007 ! process (Biological Process or Molecular Function)
Annotation Extension Usage Examples
Enhancing Cell Component Annotations
Specifying the stage at which a localization is observed
Cellular component annotations can be enhanced by specifying that localization is observed during a cell cycle or developmental stage, or in the context of a specific biological process.
1. If a gene product is localized to the nuclear periphery in S phase, G2, and mitosis (S. pombe Ulp1; PMID:11884512):
col 5: GO:0034399 ! nuclear periphery col 16: exists_during(GO:0000084)|exists_during(GO:0000085)|exists_during(GO:0007067) ! S phase of mitotic cell cycle, G2 phase of mitotic cell cycle, and mitosis respectively
2. If a gene product is localized to the spindle pole body (SPB) and nucleolus in interphase and to the actin contractile ring, the mitotic spindle, and kinetochores during mitosis (S. pombe Clp1; PMID:16085490):
col 5: GO:0005816 ! spindle pole body col 16: exists_during(GO:0051329) ! interphase of mitotic cell cycle
col 5: GO:0005730 ! nucleolus col 16: exists_during(GO:0051329) ! interphase of mitotic cell cycle
col5: GO:0005826 ! actomyosin contractile ring col 16: exists_during(GO:0007067) ! mitosis
col5: GO:0005819 ! spindle col 16: exists_during(GO:0007067) ! mitosis
col5: GO:0000777 ! condensed chromosome kinetochore col 16: exists_during(GO:0007067) ! mitosis
Note that an experiment that supports 'CC exists_during BP' may also support an annotation of the 'BP occurs_in CC' pattern.
Also see the go-discuss mailing list for more information.
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