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Also see the [http://fafner.stanford.edu/pipermail/go-discuss/2011-March/005560.html go-discuss mailing list] for more information. | Also see the [http://fafner.stanford.edu/pipermail/go-discuss/2011-March/005560.html go-discuss mailing list] for more information. | ||
== Using examples to demonstrate [[Folding_and_Unfolding]] using the relationship results_in_determination_of == | |||
{| class="wikitable" border="1" | |||
! Folded/unfolded | |||
!DB (Col 2) | |||
!Object (Col 3) | |||
!GO ID (Col 5) | |||
!Reference (Col 6) | |||
!Extension (Col 16) | |||
!Parent terms for new folded GO term | |||
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| Unfolded | |||
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| Folded | |||
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'''OWL class expression:''' | |||
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Revision as of 05:53, 20 February 2015
Back to Annotation usage examples for each annotation extension relation
Definition
Identifies a process during which a cellular component is present.
Child terms
- None.
Scope of use
Domain
BFO:0000004 ! independent continuant (Cellular Component)
Range
GO:0008150 ! Biological Process
Annotation Extension Usage Examples
Enhancing Cell Component Annotations
Specifying the stage at which a localization is observed
Cellular component annotations can be enhanced by specifying that localization is observed during a cell cycle or developmental stage, or in the context of a specific biological process.
1. If a gene product is localized to the nuclear periphery in S phase, G2, and mitosis (S. pombe Ulp1; PMID:11884512):
col 5: GO:0034399 ! nuclear periphery col 16: exists_during(GO:0000084)|exists_during(GO:0000085)|exists_during(GO:0007067) ! S phase of mitotic cell cycle, G2 phase of mitotic cell cycle, and mitosis respectively
2. If a gene product is localized to the spindle pole body (SPB) and nucleolus in interphase and to the actin contractile ring, the mitotic spindle, and kinetochores during mitosis (S. pombe Clp1; PMID:16085490):
col 5: GO:0005816 ! spindle pole body col 16: exists_during(GO:0051329) ! interphase of mitotic cell cycle
col 5: GO:0005730 ! nucleolus col 16: exists_during(GO:0051329) ! interphase of mitotic cell cycle
col5: GO:0005826 ! actomyosin contractile ring col 16: exists_during(GO:0007067) ! mitosis
col5: GO:0005819 ! spindle col 16: exists_during(GO:0007067) ! mitosis
col5: GO:0000777 ! condensed chromosome kinetochore col 16: exists_during(GO:0007067) ! mitosis
Note that an experiment that supports 'CC exists_during BP' may also support an annotation of the 'BP occurs_in CC' pattern.
Also see the go-discuss mailing list for more information.
Using examples to demonstrate Folding_and_Unfolding using the relationship results_in_determination_of
Folded/unfolded | DB (Col 2) | Object (Col 3) | GO ID (Col 5) | Reference (Col 6) | Extension (Col 16) | Parent terms for new folded GO term |
---|---|---|---|---|---|---|
Unfolded | ||||||
Folded |
OWL class expression:
Back to Annotation usage examples for each annotation extension relation