Happens during: Difference between revisions

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==Annotation Extension Usage Examples==
==Annotation Extension Usage Examples==
'''1. A process occurring during cell development'''
Statement from paper:
''In most cell systems that have been examined, the primary signal transduction pathway for BMPs involves phosphorylation of Smad-1 [22]... To determine if BMP-5 initiates similar signaling events in sympathetic neurons, cultured sympathetic neurons grown in the absence of glial cells were treated with BMP-5 for 30 or 60 min then analyzed by Western blotting using Abs specific for total Smad-1 or for phosphorylated Smad-1. Phosphorylation of Smad-1 is evident within 30 min after exposure to BMP-5 (Figure 4A) with significantly increased pSmad-1 levels apparent at 60min. In contrast, treatment with BMP-5 did not alter levels of total Smad-1 (Figure 4B).''
{| class="wikitable" border="1"
|-
! Gene Name (col 2)
! GO ID (col 5)
! Reference (col 6)
! Evidence (col 7)
! Annotation Extension (col 16)
|-
| P22003  <span style="color:green">BMP5</span>
| GO:0010862 <span style="color:green">positive regulation of pathway-restricted SMAD protein phosphorylation</span>
| PMID:11580864
| IDA
| happens_during(GO:0016358 <span style="color:green">dendrite development</span>)
|}





Revision as of 07:01, 21 September 2012

Definition

Identifies a process during which a molecular function or biological process occurs

Comment

To link a physical entity to a process by duration, use exists_during.

Synonym

occurs_during (EXACT)

Child terms

  • None.

Scope of use

Domain

BFO:0000007 ! process (Biological Process or Molecular Function)

Range

BFO:0000007 ! process (Biological Process or Molecular Function)

Annotation Extension Usage Examples

1. A process occurring during cell development

Statement from paper:

In most cell systems that have been examined, the primary signal transduction pathway for BMPs involves phosphorylation of Smad-1 [22]... To determine if BMP-5 initiates similar signaling events in sympathetic neurons, cultured sympathetic neurons grown in the absence of glial cells were treated with BMP-5 for 30 or 60 min then analyzed by Western blotting using Abs specific for total Smad-1 or for phosphorylated Smad-1. Phosphorylation of Smad-1 is evident within 30 min after exposure to BMP-5 (Figure 4A) with significantly increased pSmad-1 levels apparent at 60min. In contrast, treatment with BMP-5 did not alter levels of total Smad-1 (Figure 4B).


Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
P22003 BMP5 GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation PMID:11580864 IDA happens_during(GO:0016358 dendrite development)




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