Happens during

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Definition

Identifies a process during which a biological process occurs

Comment

To link a physical entity to a process by duration, use exists_during. Only use this term is the role of the gene product in the process is unclear, but occurs during a specific term. Consider the use of the relationship part_of is the process is definitely part of the biological process

Synonym

occurs_during (EXACT)

Child terms

  • None.

Scope of use

Domain

BFO:0000007 ! process (Biological Process or Molecular Function)

Range

GO:0008150 ! Biological Process

Annotation Extension Usage Examples

1. A process occurring during cell development

Statement from paper:

In most cell systems that have been examined, the primary signal transduction pathway for BMPs involves phosphorylation of Smad-1 [22]... To determine if BMP-5 initiates similar signaling events in sympathetic neurons, cultured sympathetic neurons grown in the absence of glial cells were treated with BMP-5 for 30 or 60 min then analyzed by Western blotting using Abs specific for total Smad-1 or for phosphorylated Smad-1. Phosphorylation of Smad-1 is evident within 30 min after exposure to BMP-5 (Figure 4A) with significantly increased pSmad-1 levels apparent at 60min. In contrast, treatment with BMP-5 did not alter levels of total Smad-1 (Figure 4B).


Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
P22003 BMP5 GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation PMID:11580864 IDA happens_during(GO:0016358 dendrite development)


2. A process occurring during a cell cycle phase

Statement from paper:

We here show that the mitotic master phosphatase Cdc14 targets Yen1 to the nucleus in early anaphase through the FEAR network. In Figure 2, Yen1 re-localizes back to the nucleus in early anaphase in a Cdc14-dependent manner.

Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
Q00684 cdc14 GO:0034504 protein localization to nucleus PMID:24626187 happens_during(GO:0000090 mitotic anaphase)

Using examples to demonstrate Folding_and_Unfolding using the relationship happens_during

2. Cdc14 targets Yen1 to the nucleus in early anaphase, PMID:24626187

Folded/unfolded DB (Col 2) Object (Col 3) GO ID (Col 5) Reference (Col 6) Extension (Col 16) Parent terms for new folded GO term
Unfolded Q00684 cdc14 GO:0034504 protein localization to nucleus PMID:24626187 happens_during(GO:0000090 mitotic anaphase)
Folded Q00684 cdc14 New potential GO term protein localisation to nucleus during mitotic anaphase PMID:24626187 happens_during GO:0048471 mitotic anaphase


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