Annotation Extension Relation:has direct input: Difference between revisions
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==Annotation Extension Usage Examples== | ==Annotation Extension Usage Examples== | ||
''Transcription factor binding to potential target sequences in vitro:''' | '''Transcription factor binding to potential target sequences in vitro:''' | ||
Statement from paper: By performing gel electrophoretic mobility shift assays, we could detect efficient binding of ATF-2 to the elements found in the bec-1 and lgg-1 promoters (Fig. 5C). (Note that binding to lin-48 is also reported as a positive control). | Statement from paper: By performing gel electrophoretic mobility shift assays, we could detect efficient binding of ATF-2 to the elements found in the bec-1 and lgg-1 promoters (Fig. 5C). (Note that binding to lin-48 is also reported as a positive control). |
Revision as of 15:48, 25 July 2012
Definition
Identifies an entity directly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in MF or BP.
Child terms
- None
Annotation Extension Usage Examples
Transcription factor binding to potential target sequences in vitro:
Statement from paper: By performing gel electrophoretic mobility shift assays, we could detect efficient binding of ATF-2 to the elements found in the bec-1 and lgg-1 promoters (Fig. 5C). (Note that binding to lin-48 is also reported as a positive control).
Gene Name (col 2) | GO ID (col 5) | Reference (col 6) | Evidence (col 7) | Annotation Extension (col 16) |
---|---|---|---|---|
WBGene00000220 | GO:0001012 RNA polymerase II regulatory region DNA binding | PMID:21502138 | IDA |
has_direct_input(WB:WBGene00000247 bec-1)|has_direct_input(WB:WBGene00002980 lgg-1)|has_direct_input(WB:WBGene00003033 lin-48) |