Difference between revisions of "Annotation Extension Relation:has direct input"

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(Annotation Extension Usage Examples)
(Annotation Extension Usage Examples)
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'''Targets of protein kinase activity:'''
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Statements from paper:
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''A final line of evidence that BAF-1 is a substrate for VRK-1 was obtained with purified recombinant proteins, which demonstrated that BAF-1 was phosphorylated by VRK-1 in vitro (Figure 4H, lower panel). In addition, VRK-1 was autophosphorylated (Figure 4H, upper panel).''
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{| class="wikitable" border="1"
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|-
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! Gene Name (col 2)
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! GO ID (col 5)
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! Reference (col 6)
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! Evidence (col 7)
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! Annotation Extension (col 16)
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|-
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| WBGene00017895
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|GO:0004672 <span style="color:green">protein kinase activity</span>
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| PMID:17170708
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| IDA
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has_direct_input(WB:WBGene00000235 <span style="color:green">baf-1</span>)
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|}
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Back to [http://wiki.geneontology.org/index.php/Annotation_Extension:_Capturing_participants Annotation Extension: Capturing participants]
 
Back to [http://wiki.geneontology.org/index.php/Annotation_Extension:_Capturing_participants Annotation Extension: Capturing participants]

Revision as of 14:12, 25 July 2012

Definition

Identifies an entity directly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in MF or BP.

Child terms

  • None

Annotation Extension Usage Examples

Transcription factor binding to potential target sequences in vitro:

Statement from paper:

By performing gel electrophoretic mobility shift assays, we could detect efficient binding of ATF-2 to the elements found in the bec-1 and lgg-1 promoters (Fig. 5C).

(Note that binding to lin-48 is also reported as a positive control).

Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
WBGene00000220 GO:0001012 RNA polymerase II regulatory region DNA binding PMID:21502138 IDA

has_direct_input(WB:WBGene00000247 bec-1)|has_direct_input(WB:WBGene00002980 lgg-1)|has_direct_input(WB:WBGene00003033 lin-48)


Targets of protein kinase activity:

Statements from paper:

A final line of evidence that BAF-1 is a substrate for VRK-1 was obtained with purified recombinant proteins, which demonstrated that BAF-1 was phosphorylated by VRK-1 in vitro (Figure 4H, lower panel). In addition, VRK-1 was autophosphorylated (Figure 4H, upper panel).


Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
WBGene00017895 GO:0004672 protein kinase activity PMID:17170708 IDA

has_direct_input(WB:WBGene00000235 baf-1)


Back to Annotation Extension: Capturing participants