Annotation Extension Relation:has direct input: Difference between revisions
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'''Targets of protein kinase activity:''' | |||
Statements from paper: | |||
''A final line of evidence that BAF-1 is a substrate for VRK-1 was obtained with purified recombinant proteins, which demonstrated that BAF-1 was phosphorylated by VRK-1 in vitro (Figure 4H, lower panel). In addition, VRK-1 was autophosphorylated (Figure 4H, upper panel).'' | |||
{| class="wikitable" border="1" | |||
|- | |||
! Gene Name (col 2) | |||
! GO ID (col 5) | |||
! Reference (col 6) | |||
! Evidence (col 7) | |||
! Annotation Extension (col 16) | |||
|- | |||
| WBGene00017895 | |||
|GO:0004672 <span style="color:green">protein kinase activity</span> | |||
| PMID:17170708 | |||
| IDA | |||
| | |||
has_direct_input(WB:WBGene00000235 <span style="color:green">baf-1</span>) | |||
|} | |||
Back to [http://wiki.geneontology.org/index.php/Annotation_Extension:_Capturing_participants Annotation Extension: Capturing participants] | Back to [http://wiki.geneontology.org/index.php/Annotation_Extension:_Capturing_participants Annotation Extension: Capturing participants] |
Revision as of 17:12, 25 July 2012
Definition
Identifies an entity directly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in MF or BP.
Child terms
- None
Annotation Extension Usage Examples
Transcription factor binding to potential target sequences in vitro:
Statement from paper:
By performing gel electrophoretic mobility shift assays, we could detect efficient binding of ATF-2 to the elements found in the bec-1 and lgg-1 promoters (Fig. 5C).
(Note that binding to lin-48 is also reported as a positive control).
Gene Name (col 2) | GO ID (col 5) | Reference (col 6) | Evidence (col 7) | Annotation Extension (col 16) |
---|---|---|---|---|
WBGene00000220 | GO:0001012 RNA polymerase II regulatory region DNA binding | PMID:21502138 | IDA |
has_direct_input(WB:WBGene00000247 bec-1)|has_direct_input(WB:WBGene00002980 lgg-1)|has_direct_input(WB:WBGene00003033 lin-48) |
Targets of protein kinase activity:
Statements from paper:
A final line of evidence that BAF-1 is a substrate for VRK-1 was obtained with purified recombinant proteins, which demonstrated that BAF-1 was phosphorylated by VRK-1 in vitro (Figure 4H, lower panel). In addition, VRK-1 was autophosphorylated (Figure 4H, upper panel).
Gene Name (col 2) | GO ID (col 5) | Reference (col 6) | Evidence (col 7) | Annotation Extension (col 16) |
---|---|---|---|---|
WBGene00017895 | GO:0004672 protein kinase activity | PMID:17170708 | IDA |
has_direct_input(WB:WBGene00000235 baf-1) |