Annotation Extension Relation:has direct input: Difference between revisions
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'''THIS RELATION IS DEPRECATED''' | |||
Curators should use [http://wiki.geneontology.org/index.php/Annotation_Extension_Relation:has_input has input] to capture inputs/substrates/targets of Molecular Functions | |||
<pre style="color:#808080"> | |||
==Definition== | ==Definition== | ||
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==Comment== | ==Comment== | ||
To use this relationship there must be evidence that the gene product in column 2 is known/predicted to bind the molecular target in column 16. | |||
This can be a co-immunoprecipitation (for example) demonstrated in the paper being annotated, or from evidence available in another paper, or from evidence of protein interactions which have been demonstrated in another paper for orthologous molecules. | |||
Without evidence of a relevant interaction use the relationship has_input | |||
==Synonyms== | ==Synonyms== | ||
directly_localizes NARROW | directly_localizes (NARROW) | ||
has_direct_target EXACT | has_direct_target (EXACT) | ||
has_substrate NARROW | has_substrate (NARROW) | ||
==Child terms== | ==Child terms== | ||
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[[ENTITY_UNION:0000005]] ! chemical, gene product, or complex | [[ENTITY_UNION:0000005]] ! chemical, gene product, or complex | ||
</pre> | |||
Revision as of 16:57, 20 January 2020
THIS RELATION IS DEPRECATED
Curators should use has input to capture inputs/substrates/targets of Molecular Functions
==Definition== Identifies an entity directly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in a Molecular Function or Biological Process. ==Comment== To use this relationship there must be evidence that the gene product in column 2 is known/predicted to bind the molecular target in column 16. This can be a co-immunoprecipitation (for example) demonstrated in the paper being annotated, or from evidence available in another paper, or from evidence of protein interactions which have been demonstrated in another paper for orthologous molecules. Without evidence of a relevant interaction use the relationship has_input ==Synonyms== directly_localizes (NARROW) has_direct_target (EXACT) has_substrate (NARROW) ==Child terms== * None ==Scope of use== ===Domain=== BFO:0000007 ! process (Biological Process or Molecular Function) ===Range=== [[ENTITY_UNION:0000005]] ! chemical, gene product, or complex
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