Annotation Extension Relation:has direct input

From GO Wiki
Revision as of 07:49, 1 August 2012 by Huntley (talk | contribs) (moved Has direct input to Annotation Extension Relation:has direct input: To distinguish the annotation extension relations from other relations)
Jump to navigation Jump to search

Definition

Identifies an entity directly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in MF or BP.

Child terms

  • None

Annotation Extension Usage Examples

Transcription factor binding to potential target sequences in vitro:

Statement from paper:

By performing gel electrophoretic mobility shift assays, we could detect efficient binding of ATF-2 to the elements found in the bec-1 and lgg-1 promoters (Fig. 5C).

(Note that binding to lin-48 is also reported as a positive control).

Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
WBGene00000220 GO:0001012 RNA polymerase II regulatory region DNA binding PMID:21502138 IDA

has_direct_input(WB:WBGene00000247 bec-1)|has_direct_input(WB:WBGene00002980 lgg-1)|has_direct_input(WB:WBGene00003033 lin-48)


Targets of protein kinase activity:

Statements from paper:

A final line of evidence that BAF-1 is a substrate for VRK-1 was obtained with purified recombinant proteins, which demonstrated that BAF-1 was phosphorylated by VRK-1 in vitro (Figure 4H, lower panel). In addition, VRK-1 was autophosphorylated (Figure 4H, upper panel).


Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
WBGene00017895 GO:0004672 protein kinase activity PMID:17170708 IDA

has_direct_input(WB:WBGene00000235 baf-1)|has_direct_input(WB:WBGene00017895 vrk-1)


Back to Annotation Extension: Capturing participants