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Back to [http://wiki.geneontology.org/index.php/Annotation_usage_examples_for_each_annotation_extension_relation Annotation usage examples for each annotation extension relation] | |||
==Definition== | ==Definition== | ||
Identifies an entity that is changed or created after participation in a molecular function or biological process. | |||
==Comment== | |||
[http://wiki.geneontology.org/index.php/Annotation_Extension_Relation:has_participant#Comment '''More details on the limited use of has_output with biological process annotations'''] | |||
==Child terms== | ==Child terms== | ||
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===Domain=== | ===Domain=== | ||
GO:0008150 ! process (Biological Process) | |||
===Range=== | ===Range=== | ||
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==Annotation Extension Usage Examples== | ==Annotation Extension Usage Examples== | ||
''' | '''1. FGF production in response to stimulation of protein A''' | ||
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! Annotation Extension (col 16) | ! Annotation Extension (col 16) | ||
|- | |- | ||
| | | Pxxxx | ||
|GO: | |Protein A | ||
| PMID: | |GO:0090269 <span style="color:green">fibroblast growth factor production</span> | ||
| | |PMID:xxx | ||
|has_output (UniProt:Q9GZV9 <span style="color:green">FGF23</span>) | |||
has_output( | | | ||
|} | |||
== Using examples to demonstrate [[Folding_and_Unfolding]] using the relationship has_output == | |||
'''1. FGF production in response to stimulation of protein A''' | |||
{| class="wikitable" border="1" | |||
! Folded/unfolded | |||
!DB (Col 2) | |||
!Object (Col 3) | |||
!GO ID (Col 5) | |||
!Reference (Col 6) | |||
!Extension (Col 16) | |||
!Parent terms for new folded GO term | |||
|- | |||
| Unfolded | |||
| Pxxxx | |||
|Protein A | |||
|GO:0090269 <span style="color:green">fibroblast growth factor production</span> | |||
|PMID:xxx | |||
|has_output (UniProt:Q9GZV9 <span style="color:green">FGF23</span>) | |||
| | |||
|- | |||
| Folded | |||
| Pxxxx | |||
|Protein A | |||
|New GO term <span style="color:green">FGF23 fibroblast growth factor cytokine production</span> | |||
|PMID:xxx | |||
| | |||
|is_a GO:0090269 <span style="color:red">fibroblast growth factor production</span> | |||
|- | |||
|} | |} | ||
'''OWL class expression:''' GO:0090269 <span style="color:red">fibroblast growth factor production</span> AND has_output SOME UniProt:Q9GZV9 <span style="color:red">FGF23</span> | |||
---- | |||
---- | ---- | ||
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[[Category:relations]] | [[Category:relations]] | ||
[[Category:annotation extension]] | [[Category:annotation extension]] | ||
[[Category: GO-CAM Relations]] |
Revision as of 11:53, 13 April 2019
Back to Annotation usage examples for each annotation extension relation
Definition
Identifies an entity that is changed or created after participation in a molecular function or biological process.
Comment
More details on the limited use of has_output with biological process annotations
Child terms
- None
Scope of use
Domain
GO:0008150 ! process (Biological Process)
Range
ENTITY_UNION:0000005 ! chemical, gene product, or complex
Annotation Extension Usage Examples
1. FGF production in response to stimulation of protein A
Gene Name (col 2) | GO ID (col 5) | Reference (col 6) | Evidence (col 7) | Annotation Extension (col 16) | |
---|---|---|---|---|---|
Pxxxx | Protein A | GO:0090269 fibroblast growth factor production | PMID:xxx | has_output (UniProt:Q9GZV9 FGF23) |
Using examples to demonstrate Folding_and_Unfolding using the relationship has_output
1. FGF production in response to stimulation of protein A
Folded/unfolded | DB (Col 2) | Object (Col 3) | GO ID (Col 5) | Reference (Col 6) | Extension (Col 16) | Parent terms for new folded GO term |
---|---|---|---|---|---|---|
Unfolded | Pxxxx | Protein A | GO:0090269 fibroblast growth factor production | PMID:xxx | has_output (UniProt:Q9GZV9 FGF23) | |
Folded | Pxxxx | Protein A | New GO term FGF23 fibroblast growth factor cytokine production | PMID:xxx | is_a GO:0090269 fibroblast growth factor production |
OWL class expression: GO:0090269 fibroblast growth factor production AND has_output SOME UniProt:Q9GZV9 FGF23
Back to Annotation usage examples for each annotation extension relation