Occurs in: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
mNo edit summary
Line 51: Line 51:
|}
|}


 
Note the use of the comma to create a compound annotation extension. The interpretation of this annotation is CASQ2 is involved in sequestering calcium ions in the sarcoplasmic reticulum of cardiac muscle cell.
----
----



Revision as of 04:49, 21 September 2012

Definition

Identifies the cell, tissue, cellular component or anatomical entity in which the molecular function or biological process occurs.

Child terms

  • None.

Scope of use

Domain

BFO:0000007 ! process (Biological Process or Molecular Function)

Range

ENTITY_UNION:0000006 ! entity

Annotation Extension Usage Examples

Enhancing Molecular Function and Biological Process Annotations

Specifying the cell or tissue type in which a process happens

Examples of this usage of occurs_in can be found on the documentation page for Column_16:_Cell_Type


Specifying the subcellular location in which a process happens

Sequestering of calcium ion at sarcoplasmic reticulum:

Statement from paper:

To characterize the effects of the new CASQ2 mutations on SR Ca2+ handling in vivo, we performed experiments in adult rat ventricular myocytes infected with adenoviral constructs. Caffeine (10 mmol/L) was applied to myocytes expressing either WT or mutant CASQ2 to evaluate the SR Ca2+-storing capacity by measurement of fluo-3 fluorescence and of Na+/Ca2+ exchange current (INCX; Figure 4A; Table 1).21 Expression of WT increased the SR Ca2+ content by 50%, whereas CASQ2 G112+5X reduced the SR content, not only as compared with WT expression but also as compared with native cells (Ad-control).


Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
O14958 CASQ2 GO:0051208 sequestering of calcium ion PMID:16908766 IMP occurs_in(GO:0016529 sarcoplasmic reticulum), occurs_in(CL:0000746 cardiac muscle cell)

Note the use of the comma to create a compound annotation extension. The interpretation of this annotation is CASQ2 is involved in sequestering calcium ions in the sarcoplasmic reticulum of cardiac muscle cell.


Back to Annotation usage examples for each annotation extension relation