Annotation Issues and Management
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Annotation Quality control
- Annotation QC
- Annotation completion Source Forge tracker [http://sourceforge.net/tracker/?group_id=36855&atid=1040173]
- Reference_Genome_Database_Reports. Those reports are generated with the GOOSE SQL interface and provide lists of potentially mis-annotated genes.
Annotation Consistency Issues
- Annotation consistency: IEA, ISS, IC Usage Discussion: Tanya Berardini, Emily Dimmer, Pascale Gaudet, David Hill, Chris Mungall, Kimberly VanAuken
- Annotation consistency: HTP Annotation of high throughput experiments, including microarray data SGD GO HTP guidelines : Stacia Engel, Emily Dimmer, Val Wood, Ruth Lovering
- Annotation consistency: Using IEP, including microarray data, and heat shock protein example: Emily Dimmer, Stacia Engel, Pascale Gaudet, Ruth Lovering, Varsha Khodiyar, Val Wood
- Annotation consistency : ISS Usage
- Annotation consistency: x protein binding and with : Becky Foulger, David Hill
- Annotation consistency: 'Response to' terms: To be discussed at the 2010 GO camp Check that all databases use evidence codes correctly for those terms. Tanya Berardini, Emily Dimmer, Pascale Gaudet, Ruth Lovering
Improving GO terms and definitions
- Annotation consistency: chaperone activity definition: clarify the definitions of unfolded/misfolded protein binding and add chaperone activity as a synonym to both of the terms. Also add ‘de novo’ synonym to ‘unfolded protein binding’. Victoria Petri
- Binding terms working group
Issues regarding annotating particular experimental assays
Misused terms
This page provides a list of often misused terms and (hopefully) an explanation as to how to use the term properly. This information should also be included in the 'comments' of the OBO file.
Variant_annotation
- This page describes how each database handles curation of multiple forms of the same gene