Difference between revisions of "Annotation Relations"

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= Annotation Extension Relations =
 
= Annotation Extension Relations =
 
*[http://wiki.geneontology.org/index.php/Annotation_usage_examples_for_each_annotation_extension_relation Annotation Extension Relations]
 
*[http://wiki.geneontology.org/index.php/Annotation_usage_examples_for_each_annotation_extension_relation Annotation Extension Relations]
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 +
= Relations Tables (works in progress) =
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 +
{| class="wikitable"
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!colspan="2" |Gene Product-to-GO Term Relations
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|-
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|rowspan="2"|Molecular Function
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|[[enables]]
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|-
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|[[contributes to]] (as complex member)
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|-
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|rowspan="7"|Biological Process
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|[[involved in]]
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|-
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|[[acts upstream of or within]]
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|-
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|[[acts upstream of or within, positive effect]]
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|-
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|[[acts upstream of or within, negative effect]]
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|-
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|[[acts upstream of]]
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|-
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|[[acts upstream of, positive effect]]
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|-
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|[[acts upstream of, negative effect]]
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|-
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|rowspan="4"|Cellular Component
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|[[is active in]]
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|-
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|[[part of]]
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|-
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|[[located in]]
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|-
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|[[colocalizes with]]
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|}
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{| class="wikitable"
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!colspan="3" | GO-CAM Relations
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|-
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!colspan="3"| Molecular Function
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|-
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|rowspan="1"| Molecular Function - Gene Product
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|[[enabled by]]
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|protein kinase activity ''enabled by'' PLK1
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|-
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|rowspan="1"| Molecular Function - Location
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|[[occurs in]]
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|protein kinase activity ''occurs in'' cytosol
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|-
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|rowspan="1"| Molecular Function - Input
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|[[has input]]
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|protein kinase activity ''has input'' MCM3
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|-
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|rowspan="1"| Molecular Function - Output
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|[[has output]]
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|protein kinase activity ''has output'' MCM3-2P
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|-
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|rowspan="1"| Molecular Function - Temporal Phase
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|[[happens during]]
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|protein kinase activity ''happens during'' G1 phase
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|-
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|rowspan="1"| Molecular Function - Molecular Function
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|[[directly positively regulates]]
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|protein kinase activity ''directly positively regulates'' ion transmembrane transporter activity
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|-
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|rowspan="1"| Molecular Function - Molecular Function
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|[[directly negatively regulates]]
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|protein kinase activity ''directly negatively regulates'' peroxidase activity
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|-
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|rowspan="1"| Molecular Function - Molecular Function
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|[[directly provides input for]]
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|peptidase activity ''directly provides input for'' receptor activity
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|}
  
 
[[Category: Relations]]
 
[[Category: Relations]]

Revision as of 13:53, 14 June 2019

Gene Product to GO Term Relations

Biological Process

acts upstream of or within

acts upstream of or within, positive effect

acts upstream of or within, negative effect

acts upstream of

acts upstream of, positive effect

acts upstream of, negative effect

involved in

Molecular Function

enables

contributes to

Cellular Component

part of (GP2Term)

is active in

colocalizes with

GO-CAM Relations

Molecular Function to Gene Product

enabled by

Molecular Function to Cellular Component

occurs in

Molecular Function to Molecular Function

directly provides input for

directly positively regulates

directly negatively regulates

Molecular Function to Biological Process

part of

causally upstream of or within, positive effect

causally upstream of or within, negative effect

causally upstream of, positive effect

causally upstream of negative effect

Molecular Function to Inputs and Outputs

has input

has output

Molecular Function to Temporal Phase

happens during

Biological Process to Molecular Function

causally upstream of, positive effect

causally upstream of negative effect

positively regulates

negatively regulates

Biological Process to Cellular Component

occurs in

Biological Process to Cell or Anatomy Term

occurs in

Biological Process to Temporal Phase

happens during

Biological Process to Inputs and Outputs

has input

has output

Biological Process to Biological Process

Annotation Extension Relations

Relations Tables (works in progress)

Gene Product-to-GO Term Relations
Molecular Function enables
contributes to (as complex member)
Biological Process involved in
acts upstream of or within
acts upstream of or within, positive effect
acts upstream of or within, negative effect
acts upstream of
acts upstream of, positive effect
acts upstream of, negative effect
Cellular Component is active in
part of
located in
colocalizes with


GO-CAM Relations
Molecular Function
Molecular Function - Gene Product enabled by protein kinase activity enabled by PLK1
Molecular Function - Location occurs in protein kinase activity occurs in cytosol
Molecular Function - Input has input protein kinase activity has input MCM3
Molecular Function - Output has output protein kinase activity has output MCM3-2P
Molecular Function - Temporal Phase happens during protein kinase activity happens during G1 phase
Molecular Function - Molecular Function directly positively regulates protein kinase activity directly positively regulates ion transmembrane transporter activity
Molecular Function - Molecular Function directly negatively regulates protein kinase activity directly negatively regulates peroxidase activity
Molecular Function - Molecular Function directly provides input for peptidase activity directly provides input for receptor activity