Apr2006 GO Ed report
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GO Editorial Office Report - April 2006
SourceForge items Items opened 52 Closed by editorial office 40 (note: 1 SF item closed outside GO-Ed. this month; see end of report for details and for non-GO-Ed contributors to items we closed) Items in progress, assigned to editorial office 74 See monthly report in CVS for ontology statistics. Erika has provided quite a bit of detail on her recent work, which I'll send around separately. Content working group rough draft (Midori, with input from all GO Eds) Content topics in progress: Complete is_a paths for cellular component - update to get back in sync with 'active' ontology, and almost ready to GO (Jane, with Chris M) Morphogenesis (Jen, with dev biol group) Vasculature (Jen, with dev biol group) Cell differentiation, general ontology structure (Jen, with dev biol group) Standard definition for 'maturation' (Jen, with dev biol group) Content topics resolved: Development term definitions: change 'processes' to 'process' (Jen) Several small things for SourceForge items OBO-Edit working group update: Working group summary (Midori) User guide progress IRC April 18 (next: May 4) Testing beta18 OBO-Edit walkthrough for 'various EBI bods' (Jane) Conferences/meetings Post-St. Croix chats with MA to get overview of action items BioModels.net Training Camp (organized by Nicolas le Novere, EBI) General 'Introduction to GO' talk (Midori) Presentation to GSK (Erika, on her work in the GO Ed. office) Some planning for upcoming meetings, including neurobiology content meeting and annotation camp Publication Book chapter in progress: 'Parasites and GO' for bioinformatics text book for parasitologists (Jane, with Matt Berriman) figs2go & ko2go mappings in progress (Jane, with MA on ko2go) mesh2go mapping under discussion (Jane) Annotation outreach (Jen) Mailing list created for working group Working group summary Outreach to 'SEEDS' group Collaboration set up between GOA and a new annotation group in Italy Work on Roslin/GOA Chicken Consortium Grant proposal Some updates to web pages (Amelia) A few queries on the mailing list (mainly Midori) GO Bibliography now has 835 entries Appendix 1: input from others on SF items closed this month 1025157 - many! (This is the 'new look cell cycle entry, on which many curators and a few PIs commented, both in the SF entry and by email. Major contributors include Val Wood, Chandra Theesfeld.) 1427382 (& 1473287) - Becky Foulger, Karen Christie 1428548 - Melissa Haendel, Doug Howe 1435926 - Karen Christie 1446726 - Karen Christie 1472538 - Becky Foulger, Alex Diehl 1476809 - Becky Foulger, David Hill Appendix 2: SF items that touch on other OBO ontologies 1428548 - CL