Apr2010 ontology report

Ontology Development Report - April 2010

I. Ontology Development

Tracker

• Items opened: 85
• Items closed: 97
• Items still open: 252
  • assigned:
  • unassigned:

Completed content items

• Various SourceForge items

Content items in progress

• Signaling- working through the existing signaling terms to make them more consistent and fill in any gaps. [Becky]
• More kidney terms [David, Midori, Yasmin]
• Chemical_terms_in_GO - continuing to edit the GOCHE ontology (chemicals in GO) [David, Tanya, Jane & Harold]
• Adding lots of transmembrane transport terms for Val's goslim mappings. [Becky]
• Standardizing the GO terms that contain the word 'during'. [David & Tanya]
• Quality control continues as usual - reports generated by Chris (cronjobs)
  • Reasoner-based implied links for new regulation terms - also see above (David, Tanya)
  • Multiple part_of parents (several GO curators, especially Tanya & David)
  • Abduced links [[1]](David, Tanya)
  • Problematic regulates terms [[2]](David, Tanya)

Publications

• Case studies for publication on "revisability" of GO, proposed and coordinated by Sabina Leonelli - in progress (Midori, Jane, Alex, Karen C)

Anything else

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