April 2015 GOC Teleconference Agenda and Logistics: Difference between revisions
Jump to navigation
Jump to search
Paul Thomas (talk | contribs) |
|||
Line 9: | Line 9: | ||
===Introduction (11:00 - 11:05) (GO PI's)=== | ===Introduction (11:00 - 11:05) (GO PI's)=== | ||
===Discussion of priorities for calendar year 2015 (11:05 - 11:30) (GO PI's)=== | ===Discussion of priorities for calendar year 2015 (11:05 - 11:30) (GO PI's)=== | ||
* Annotation | * Common Annotation Framework/Environment (CAF/E) | ||
* | ** Goal: LEGO annotation and text mining support in production starting Sept 1 (CAF/E) | ||
* | ** Milestone 1: version of each component that can be used by curation test team | ||
* | ** Milestone 2: Integration of components into Common Annotation Framework/Environment | ||
** Preliminary results on javascript PAINT as part of CAF/E | |||
* Phylogenetic annotation | |||
** meet production goals: annotate 1/3 of genes this grant year | |||
** software for updating annotations to reflect changes in gene sets, experimental annotations and ontology | |||
* Metrics for value/impact of GO data | |||
** Categorize and quantify usage of GO in published papers | |||
** Annotation quality metric and assessment | |||
* Monitoring and assessing our support for users | |||
** User survey | |||
** Website usability study | |||
** Enrichment Analysis: Documentation, UI improvement | |||
===Talk by Paul Pavlidis, UBC (11:30 - 12:05)=== | ===Talk by Paul Pavlidis, UBC (11:30 - 12:05)=== |
Revision as of 13:12, 31 March 2015
Logistics
- Call runs April 1, from 11am to 12:30pm EDT
- Call-in information / screen sharing: We will use Bluejeans teleconferencing software for audio and video and WILL NOT use the GO conference line. We will use Bluejeans for screen sharing also. If attendees have a question they should post it on the chat window and they will answered in order.
- Link for the Bluejeans meeting: https://bluejeans.com/626682538
Agenda
Introduction (11:00 - 11:05) (GO PI's)
Discussion of priorities for calendar year 2015 (11:05 - 11:30) (GO PI's)
- Common Annotation Framework/Environment (CAF/E)
- Goal: LEGO annotation and text mining support in production starting Sept 1 (CAF/E)
- Milestone 1: version of each component that can be used by curation test team
- Milestone 2: Integration of components into Common Annotation Framework/Environment
- Preliminary results on javascript PAINT as part of CAF/E
- Phylogenetic annotation
- meet production goals: annotate 1/3 of genes this grant year
- software for updating annotations to reflect changes in gene sets, experimental annotations and ontology
- Metrics for value/impact of GO data
- Categorize and quantify usage of GO in published papers
- Annotation quality metric and assessment
- Monitoring and assessing our support for users
- User survey
- Website usability study
- Enrichment Analysis: Documentation, UI improvement
Talk by Paul Pavlidis, UBC (11:30 - 12:05)
The use of GO in data analysis: can we raise the bar?
Other agenda items (12:05 - 12:30)
- Update on AmiGO/GO website Behave testing framework (Mary/Seth/Chris)
- Annotating complexes as objects, producing a separate GAF for complexes, educating users about these annotations
- Training curators on LEGO
Attendees
Please sign up so we know who can attend.
Name | Organization |
---|---|
Rama Balakrishnan | Stanford University, SGD |
David Hill | The Jackson Laboratory, MGI |
Harold Drabkin | The Jackson Laboratory, MGI |
Kimberly | Cal Tech, Wormbase |
Paul Thomas | USC |
Judy Blake | JAX |
Huaiyu Mi | USC |
Moni Munoz-Torres | Lawrence Berkeley National Lab, BBOP |
Seth Carbon | Lawrence Berkeley National Lab, BBOP |
Chris Mungall | Lawrence Berkeley National Lab, BBOP |
Tanya Berardini | Phoenix Bioinformatics, TAIR |
Eva Huala | Phoenix Bioinformatics, TAIR |
Doug Howe | ZFIN |
Sabrina Toro | ZFIN |
Pascale Gaudet | GOC / neXtProt |
Birgit Meldal | IntAct / Complex Portal |
Aleks Shypitsyna | UniProt-GOA, EMBL-EBI |
Li Ni | The Jackson Laboratory, MGI |
Rebecca Foulger | UCL |
Tom Hayman | RGD |
Mary Shimoyama | RGD |
Shur-Jen Wang | RGD |
Ruth Lovering | UCL |