Annotation Archived Pages: Difference between revisions

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[[Extension of Protein2GO to non-UniProtKB Identifiers]]
[[Extension of Protein2GO to non-UniProtKB Identifiers]]
=== Annotation File Formats ===
* [http://go.berkeleybop.org/news4go/node/80| Moved to GAF2.0 format on the 1st June 2010]


=== Activities ===
=== Activities ===
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*Enforce annotation rules/policies within GOC
*Enforce annotation rules/policies within GOC
*Maintain the annotation/evidence code documentation
*Maintain the annotation/evidence code documentation
**[[Mock-ups of new GOC Annotation pages]]
*Train/assist new groups with annotations: see [http://geneontology.org/docs/contributing-to-go-terms/]
*Train/assist new groups with annotations: see [[How_External_Communities_can_contribute_annotations_to_the_GO_Consortium]]
*Educate and keep all the annotating groups up-to-date with changes in GAF format
*Educate and keep all the annotating groups up-to-date with changes in GAF format


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*[[gp2protein file]]
*[[gp2protein file]]
*[[gp2rna file]]
*[[gp2rna file]]
*[[gp_unlocalized file]]
*[[mechanisms for reducing annotation redundancy]]
*[[mechanisms for reducing annotation redundancy]]
*[[Annotations to Cell Fraction-type terms]]
*[[Annotations to Cell Fraction-type terms]]
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=== Meeting calendar ===
=== Meeting calendar ===
[[Annotation_topics for next meeting]]


[[Annotation_31Jan10]]
[[Annotation_31Jan10]]
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[[Annotation_08Apr10]]
[[Annotation_08Apr10]]
[[Annotation_22Mar10]]


[[Annotation_15Mar10]]
[[Annotation_15Mar10]]
[[Annotation_10Apr10]]


=== Process ===
=== Process ===


[http://gocwiki.geneontology.org/index.php/Annotation_Issues_and_Management Annotation Issues]
[[Annotation_Issues_and_Management]]


=== Issues for the Annotation Group ===
=== Issues for the Annotation Group ===
# Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)


[[Annotations to Catalytic activity with IPI]]
[[Annotations to Catalytic activity with IPI]]
[[Annotation Quality Control Checks]]


[[Action items from March 2010 GOC meeting]]
[[Action items from March 2010 GOC meeting]]


====How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?====
OBO-Edit can load files from the disk OR from a URL.<br>
Choose the "File -> Load..." menu option<br>
Choose the OBO File Adapter<br>
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box<br>
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)
To see the has_part relationships, use this URL for the extended GO version:<br>


http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo


[[Category: Annotation]] [[Category:Working Groups]]
[[Category: Annotation]]

Latest revision as of 05:40, 16 April 2019

GO Annotation Meetings

2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010

Guidelines from Annotation Camp

Annotation Meeting Stanford, CA, Feb 2012

Migration of annotating groups to Protein2GO

Procedure for migration of protein annotations to Protein2GO

Extension of Protein2GO to non-UniProtKB Identifiers

Annotation File Formats

Activities

  • Roadmap 2010
  • Roadmap 2011
  • RoadMap (PDF file - provides project goals with time line)
  • Educate GOC curators about best annotation practice;
  • Enforce annotation rules/policies within GOC
  • Maintain the annotation/evidence code documentation
  • Train/assist new groups with annotations: see [1]
  • Educate and keep all the annotating groups up-to-date with changes in GAF format
  • Keep all curators up-to-date with ontology development and how it affects annotations

Monthly Reports

Meeting calendar

Annotation_31Jan10

Annotation_21Dec10

Annotation_19Oct10

Annotation_21Sept10

Annotation_17Aug10

Annotation_04Aug10

Annotation_19July10

Annotation_22June10

Annotation_08June10

Annotation_01June10

Annotation_17May10

Annotation_29Apr10

Annotation_15Apr10

Annotation_08Apr10

Annotation_15Mar10

Process

Annotation_Issues_and_Management

Issues for the Annotation Group

Annotations to Catalytic activity with IPI

Action items from March 2010 GOC meeting