https://wiki.geneontology.org/index.php?title=Aug2009_ontology_report&feed=atom&action=history
Aug2009 ontology report - Revision history
2024-03-28T20:09:46Z
Revision history for this page on the wiki
MediaWiki 1.40.0
https://wiki.geneontology.org/index.php?title=Aug2009_ontology_report&diff=22368&oldid=prev
Midori at 13:16, 2 October 2009
2009-10-02T13:16:23Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:16, 2 October 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Continued testing of OBO-Edit 2.1 beta</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Continued testing of OBO-Edit 2.1 beta</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**See meeting minutes from August [[OEWG_20090804|4]], [[OEWG_20090813|13]] and [[OEWG_20090825|25], and [[OBO-Edit_development_Monthly_Report%2C_August_2009|monthly report]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**See meeting minutes from August [[OEWG_20090804|4]], [[OEWG_20090813|13]] and [[OEWG_20090825|25<ins style="font-weight: bold; text-decoration: none;">]</ins>], and [[OBO-Edit_development_Monthly_Report%2C_August_2009|monthly report]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**ICBO presentations (see above)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**ICBO presentations (see above)</div></td></tr>
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Midori
https://wiki.geneontology.org/index.php?title=Aug2009_ontology_report&diff=21549&oldid=prev
David at 12:06, 1 September 2009
2009-09-01T12:06:17Z
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**New terms from <del style="font-weight: bold; text-decoration: none;">SDB </del>meeting (see [[Jul2009_ontology_report|July report]])</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**New terms from <ins style="font-weight: bold; text-decoration: none;">[[SDB_2009|Society for Developmental Biology]] </ins>meeting (see [[Jul2009_ontology_report|July report]])</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Several SourceForge items resolved</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Several SourceForge items resolved</div></td></tr>
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David
https://wiki.geneontology.org/index.php?title=Aug2009_ontology_report&diff=21539&oldid=prev
Midori at 09:35, 1 September 2009
2009-09-01T09:35:27Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:35, 1 September 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===I. Ontology Development===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===I. Ontology Development===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*SourceForge</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*SourceForge</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**Items opened: <del style="font-weight: bold; text-decoration: none;">77</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**Items opened: <ins style="font-weight: bold; text-decoration: none;">81</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Items closed: 75</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Items closed: 75</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**Items still open: <del style="font-weight: bold; text-decoration: none;">259</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**Items still open: <ins style="font-weight: bold; text-decoration: none;">263</ins></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>***assigned: <del style="font-weight: bold; text-decoration: none;">202</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>***assigned: <ins style="font-weight: bold; text-decoration: none;">206</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***unassigned: 57</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***unassigned: 57</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Also continuing</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Also continuing</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]]; currently moving "sensu" information from synonyms to definitions (see [[Taxon-GO_Implementation_April_2009_onwards#5th_August_2009<del style="font-weight: bold; text-decoration: none;">|notes</del>]] for latest)</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]]; currently moving "sensu" information from synonyms to definitions (see [[Taxon-GO_Implementation_April_2009_onwards#5th_August_2009<ins style="font-weight: bold; text-decoration: none;">]] and [[Taxon-GO_Implementation_August_28th_2009_onwards</ins>]] for latest)</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***Work on branching organ development (David) </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***Work on branching organ development (David) </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***Discussion on transcription factor activity and DNA binding; will take to Sept. meeting ([http://fafner.stanford.edu/pipermail/ontology-editors/2009-August/000730.html email thread])</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***Discussion on transcription factor activity and DNA binding; will take to Sept. meeting ([http://fafner.stanford.edu/pipermail/ontology-editors/2009-August/000730.html email thread])</div></td></tr>
</table>
Midori
https://wiki.geneontology.org/index.php?title=Aug2009_ontology_report&diff=21522&oldid=prev
Midori: Created page with 'Ontology Development & GO Editorial Office Report - August 2009 ===I. Ontology Development=== *SourceForge **Items opened: 77 **Items closed: 75 **Items still open: 259 ***assig…'
2009-08-31T18:03:51Z
<p>Created page with 'Ontology Development & GO Editorial Office Report - August 2009 ===I. Ontology Development=== *SourceForge **Items opened: 77 **Items closed: 75 **Items still open: 259 ***assig…'</p>
<p><b>New page</b></p><div>Ontology Development & GO Editorial Office Report - August 2009<br />
<br />
===I. Ontology Development===<br />
*SourceForge<br />
**Items opened: 77<br />
**Items closed: 75<br />
**Items still open: 259<br />
***assigned: 202<br />
***unassigned: 57<br />
<br />
*Content items resolved<br />
**New terms from SDB meeting (see [[Jul2009_ontology_report|July report]])<br />
**Several SourceForge items resolved<br />
<br />
*Content items in progress<br />
**The [[CJM_EBI_Visit_June_2009#Status_overview_and_release_plan|plan to add internal cross-products]] to the go_write (and therefore also go_ext) file is in progress.<br />
**Work continues on terms for [[Kidney_Development|kidney development]]<br />
**Evaluating new link suggestions and mismatches from [[XP:biological_process_xp_chebi|ChEBI cross-products]]<br />
**Continuing to add [[Function-Process_Links|function-process]] part-of links in gene_ontology_write.obo and gene_ontology_ext.obo<br />
**Work continues on overhauling [[Virus_terms|terms related to viruses]]<br />
**[[Signaling|Signal transduction]] overhaul is going very well; see [[Signaling_Meeting_Minutes_July_2009#3rd_August_2009]] for latest notes (Jen and experts including Sandra Orchard)<br />
**Also continuing<br />
***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products<br />
***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]]; currently moving "sensu" information from synonyms to definitions (see [[Taxon-GO_Implementation_April_2009_onwards#5th_August_2009|notes]] for latest)<br />
***Work on branching organ development (David) <br />
***Discussion on transcription factor activity and DNA binding; will take to Sept. meeting ([http://fafner.stanford.edu/pipermail/ontology-editors/2009-August/000730.html email thread])<br />
***Discussion on cellular component vs. cellular location; will take to Sept. meeting<br />
**Quality control continues as usual - reports generated by Chris<br />
***Regulation - also see above (David, Tanya)<br />
***Multiple part_of parents (several GO curators, especially Tanya & David)<br />
**Various SourceForge items<br />
<br />
*Meetings<br />
**Organization under way for September [[Cambridge_GO_Consortium_Meeting|GOC]] and [[Cambridge_GO_SAB_Meeting|SAB]] meetings<br />
<br />
*Deprecated .ontology file format retired August 1st - see [[Managers_21Jan09]] and [[GO_Timeline]]<br />
<br />
See monthly report in CVS for ontology statistics.<br />
<br />
===II. GO Editorial Office activities not represented in part I===<br />
<br />
*OBO-Edit working group:<br />
**Continued testing of OBO-Edit 2.1 beta<br />
**See meeting minutes from August [[OEWG_20090804|4]], [[OEWG_20090813|13]] and [[OEWG_20090825|25], and [[OBO-Edit_development_Monthly_Report%2C_August_2009|monthly report]]<br />
**ICBO presentations (see above)<br />
<br />
*Advocacy/outreach (Jane, Jen)<br />
**See [[Outreach_August_2009_Report|monthly report]]<br />
<br />
*Anything else<br />
**GO bibliography has 2829 entries<br />
<br />
[[Combined_Ontology_Development_and_GO_Editorial_Office_reports|Back to list]]<br />
<br />
[[Category:Reports]]</div>
Midori