Aug2010 ontology report: Difference between revisions
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Ontology Development Report - | Ontology Development Report - August 2010 | ||
===I. Ontology Development=== | ===I. Ontology Development=== | ||
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**unassigned: 94 | **unassigned: 94 | ||
====Completed | ====Completed items==== | ||
*Kidney development: mesonephros terms are done [David] | *Kidney development: mesonephros terms are done [David] | ||
*BPxBP (BP involved_in BP) clean-up for parsing is done [David and Tanya] | *BPxBP (BP involved_in BP) clean-up for parsing is done [David and Tanya] | ||
*Resolved issues regarding cognition and sensory processing [David and Tanya] | |||
*TermGenie up and running. Commits going in on a regular basis. Can request terms for regulation of existing MF and BP terms. [Chris, Seth, David, Jane, Tanya] | |||
*Various SourceForge items [all] | *Various SourceForge items [all] | ||
====Content items in progress==== | ====Content items in progress==== | ||
*Lots of enzyme-related stuff; added various new terms, filled in missing defs or EC / other xrefs for some undefined or poorly defined terms [Amelia] | |||
*First commit of the transcription overhaul was made. [Karen and David] | |||
*Started submitting missing GOCHE terms to CHEBI [Jane] | |||
*Quality control continues as usual - reports generated by Chris (cronjobs) | *Quality control continues as usual - reports generated by Chris (cronjobs) | ||
**Reasoner-based implied links for new regulation terms - also see above (David, Tanya) | **Reasoner-based implied links for new regulation terms - also see above (David, Tanya) | ||
| Line 22: | Line 25: | ||
====Publications==== | ====Publications==== | ||
* GOCHE paper draft is up and being circulated [David, Chris, Tanya, Jane, Harold, Midori and others] | |||
* Heart development paper is in the draft stage [David, Varsha] | * Heart development paper is in the draft stage [David, Varsha] | ||
*Case studies for publication on "revisability" of GO, proposed and coordinated by [http://huss.exeter.ac.uk/sociology/staff/leonelli/index.php Sabina Leonelli] - submitted to BMC Bioinformatics [Midori, Jane, Alex, Karen C] | |||
*Case studies for publication on "revisability" of GO, proposed and coordinated by [http://huss.exeter.ac.uk/sociology/staff/leonelli/index.php Sabina Leonelli] - | |||
====Anything else==== | ====Anything else==== | ||
Revision as of 09:53, 16 September 2010
Ontology Development Report - August 2010
I. Ontology Development
Tracker
- Items opened: 102
- Items closed: 88
- Items still open: 325
- assigned: 231
- unassigned: 94
Completed items
- Kidney development: mesonephros terms are done [David]
- BPxBP (BP involved_in BP) clean-up for parsing is done [David and Tanya]
- Resolved issues regarding cognition and sensory processing [David and Tanya]
- TermGenie up and running. Commits going in on a regular basis. Can request terms for regulation of existing MF and BP terms. [Chris, Seth, David, Jane, Tanya]
- Various SourceForge items [all]
Content items in progress
- Lots of enzyme-related stuff; added various new terms, filled in missing defs or EC / other xrefs for some undefined or poorly defined terms [Amelia]
- First commit of the transcription overhaul was made. [Karen and David]
- Started submitting missing GOCHE terms to CHEBI [Jane]
- Quality control continues as usual - reports generated by Chris (cronjobs)
- Reasoner-based implied links for new regulation terms - also see above (David, Tanya)
- Abduced links [[1]](David, Tanya)
Publications
- GOCHE paper draft is up and being circulated [David, Chris, Tanya, Jane, Harold, Midori and others]
- Heart development paper is in the draft stage [David, Varsha]
- Case studies for publication on "revisability" of GO, proposed and coordinated by Sabina Leonelli - submitted to BMC Bioinformatics [Midori, Jane, Alex, Karen C]