Collaboration with MIT GO-Engineering: Difference between revisions
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# MIT group provides files to GO group for examination (done) | # MIT group provides files to GO group for examination (done) | ||
# GO group reviews file and makes notes about items to discuss (March 2) | # GO group reviews file and makes notes about items to discuss (March 2) | ||
# GO group conference call (March | # GO group conference call (March 12, 2007; 11:00 am PST, 2:00 pm EST, 6:00 pm GMT) | ||
# Face-to-Face meeting at MIT (March 16) | # Face-to-Face meeting at MIT (March 16) | ||
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*Revised Schedule | *Revised Schedule | ||
*Open Session (77 Ave Louis Pasteur, Harvard Medical School) | *Open Session (77 Ave Louis Pasteur, Harvard Medical School) | ||
*9: | *9:00a Opening remarks | ||
*9:15-9:40 Marco Ramoni | *9:15-9:40 Marco Ramoni | ||
*9:40-10:10a Gil Alterovitz [or Chris Mungall] | *9:40-10:10a Gil Alterovitz [or Chris Mungall] | ||
Revision as of 08:34, 12 March 2007
The MIT group has used an algorithm to label GO nodes as too general or too specific based on the structure of the graph and the amount of annotation to terms. We are collaborating with them to examine their suggestions and modify the GO as needed.
Personnel
- David Hill (GO)
- Jane Lomax (GO)
- Midori Harris (GO)
- Chris Mungall (GO)
- Judith Blake (GO)
- Mary Dolan (GO)
- Jonathan Liu (MIT)
- Gil Alterovitz (MIT)
- Marco Ramoni (MIT)
- Ming Xiang (MIT)
Requirements:
- MIT group provides files to GO group for examination (done)
- GO group reviews file and makes notes about items to discuss (March 2)
- GO group conference call (March 12, 2007; 11:00 am PST, 2:00 pm EST, 6:00 pm GMT)
- Face-to-Face meeting at MIT (March 16)
Draft Schedule
- Revised Schedule
- Open Session (77 Ave Louis Pasteur, Harvard Medical School)
- 9:00a Opening remarks
- 9:15-9:40 Marco Ramoni
- 9:40-10:10a Gil Alterovitz [or Chris Mungall]
- 10:10-10:30a Michael Xiang
- 10:30-11:00a Coffee Break
- 11:00-11:20 Chris Mungall [or David Hill ]
- 11:20-11:40 David Hill [or Gil Alterovitz]
- 11:40-12:10 Jane Lomax
- 12:10-12:30p Closing remarks
- Closed Session (77 Ave Louis Pasteur, Harvard Medical School)
- 12:30p-1:30p Lunch
- 1:30-5:30p Workshop/meeting
- 6:30-7:00p Dinner
Documents (downloadable):
- Improving the Gene Ontology - Abstract Methods
- Re-Engineering Gene Ontology manuscript
- Quantifying the Specificity of GO Terms manuscript
- Quantifying the Specificity of GO Terms supplementary info
- "Information bottleneck" graph
- Spreadsheet column descriptions
- List of "too general" nodes, Oct. 2006
- List of "too specific" nodes, Nov. 2006
- comments on "too specific" list, Nov. 2006
- List of "too general" nodes, Dec. 2006 (is_a-complete GO)
- Suggested changes, 11/26/06
- Suggested changes, 12/10/06
- Responses to 12/10/06 suggestions
