Collaboration with MIT GO-Engineering: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
mNo edit summary
No edit summary
Line 15: Line 15:
Requirements:
Requirements:


# MIT group provides files to GO group for examination (done)
MIT group provides files to GO group for examination (done)
# GO group reviews file and makes notes about items to discuss (March 2)
GO group reviews file and makes notes about items to discuss (March 2)
# GO group conference call (March 12, 2007; 11:00 am PST, 2:00 pm EST, 6:00 pm GMT)
GO group conference call (March 12, 2007; 11:00 am PST, 2:00 pm EST, 6:00 pm GMT)
# Face-to-Face meeting at MIT (March 16)
Face-to-Face meeting at MIT (March 16)


Draft Schedule
MORNING/OPEN SESSION:
Harvard Institutes of Medicine New Research Building
Third Floor Rotunda
*9:00am Opening remarks
*9:20-9:40am Marco Ramoni, Harvard Medical School
*9:40-10:00a Judith A. Blake, The Jackson Laboratory/ GO Consortium
Gene Ontology Overview and Perspective
*10:00-10:20am Michael Xiang, Massachusetts Institute of Technology
*10:20-10:40am Chris Mungall, Lawerence Berkeley National Laboratory/
GO Consortium
*10:40-11:10am Coffee Break
*11:10-11:30am David Hill, The Jackson Laboratory/ GO Consortium
Annotating Gene Products to the Gene Ontology
*11:30-11:50am Gil Alterovitz, Harvard/ Massachusetts Institute of Technology
*11:50-12:10pm Jane Lomax, European Bioinformatics Institute Hinxton/
GO Consortium
Recent Improvements to the Gene Ontology
*12:10-12:30pm Closing Remarks
 
AFTERNOON/CLOSED SESSION:
Harvard Institutes of Medicine New Research Building
(NRB) Room 258 by Invite only
*12:30-1:30pm Lunch
*1:30-5:30pm REGO Workshop meeting
*6:00-7:00pm Dinner
 
Generously funded in part by NHGRI and i2b2


*Revised Schedule
*Open Session (77 Ave Louis Pasteur, Harvard Medical School)
*9:00a Opening remarks
*9:15-9:40 Marco Ramoni
*9:40-10:10a Gil Alterovitz [or Chris Mungall]
*10:10-10:30a Michael Xiang
*10:30-11:00a Coffee Break
*11:00-11:20 Chris Mungall  [or David Hill ]
*11:20-11:40  David Hill [or Gil Alterovitz]
*11:40-12:10  Jane Lomax
*12:10-12:30p Closing remarks
*
*Closed Session (77 Ave Louis Pasteur, Harvard Medical School)
*12:30p-1:30p Lunch
*1:30-5:30p Workshop/meeting
*6:30-7:00p Dinner


Documents (downloadable):
Documents (downloadable):

Revision as of 14:25, 12 March 2007

The MIT group has used an algorithm to label GO nodes as too general or too specific based on the structure of the graph and the amount of annotation to terms. We are collaborating with them to examine their suggestions and modify the GO as needed.

Personnel

  • David Hill (GO)
  • Jane Lomax (GO)
  • Midori Harris (GO)
  • Chris Mungall (GO)
  • Judith Blake (GO)
  • Mary Dolan (GO)
  • Jonathan Liu (MIT)
  • Gil Alterovitz (MIT)
  • Marco Ramoni (MIT)
  • Ming Xiang (MIT)

Requirements:

MIT group provides files to GO group for examination (done) GO group reviews file and makes notes about items to discuss (March 2) GO group conference call (March 12, 2007; 11:00 am PST, 2:00 pm EST, 6:00 pm GMT) Face-to-Face meeting at MIT (March 16)

MORNING/OPEN SESSION: Harvard Institutes of Medicine New Research Building Third Floor Rotunda

  • 9:00am Opening remarks
  • 9:20-9:40am Marco Ramoni, Harvard Medical School
  • 9:40-10:00a Judith A. Blake, The Jackson Laboratory/ GO Consortium

Gene Ontology Overview and Perspective

  • 10:00-10:20am Michael Xiang, Massachusetts Institute of Technology
  • 10:20-10:40am Chris Mungall, Lawerence Berkeley National Laboratory/

GO Consortium

  • 10:40-11:10am Coffee Break
  • 11:10-11:30am David Hill, The Jackson Laboratory/ GO Consortium

Annotating Gene Products to the Gene Ontology

  • 11:30-11:50am Gil Alterovitz, Harvard/ Massachusetts Institute of Technology
  • 11:50-12:10pm Jane Lomax, European Bioinformatics Institute Hinxton/

GO Consortium Recent Improvements to the Gene Ontology

  • 12:10-12:30pm Closing Remarks

AFTERNOON/CLOSED SESSION: Harvard Institutes of Medicine New Research Building (NRB) Room 258 by Invite only

  • 12:30-1:30pm Lunch
  • 1:30-5:30pm REGO Workshop meeting
  • 6:00-7:00pm Dinner

Generously funded in part by NHGRI and i2b2


Documents (downloadable):

Retrieved from "https://wiki.geneontology.org/index.php?title=Collaboration_with_MIT_GO-Engineering&oldid=7559"