Difference between revisions of "Collaboration with MIT GO-Engineering"

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*[http://www.geneontology.org/meeting/GO-MIT_March2007/Too_specific_nodes_11-01-06.xls List of "too specific" nodes, Nov. 2006]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/Too_specific_nodes_11-01-06.xls List of "too specific" nodes, Nov. 2006]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/Too_specific_nodes_MAH_comments.xls comments on "too specific" list, Nov. 2006]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/Too_specific_nodes_MAH_comments.xls comments on "too specific" list, Nov. 2006]
*[http://www.geneontology.org/meeting/GO-MIT_March2007/data_for_isACompleteOBO 12-7-06.xls List of "too general" nodes, Dec. 2006 (is_a-complete GO)]
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*[http://www.geneontology.org/meeting/GO-MIT_March2007/data_for_isACompleteOBO_12-7-06.xls List of "too general" nodes, Dec. 2006 (is_a-complete GO)]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/GO_11-26-06.pdf Suggested changes, 11/26/06]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/GO_11-26-06.pdf Suggested changes, 11/26/06]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/12-10-06_GO_changes.doc Suggested changes, 12/10/06]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/12-10-06_GO_changes.doc Suggested changes, 12/10/06]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/Changes_Ideas_12-06.doc Responses to 12/10/06 suggestions]
 
*[http://www.geneontology.org/meeting/GO-MIT_March2007/Changes_Ideas_12-06.doc Responses to 12/10/06 suggestions]

Revision as of 06:05, 22 February 2007

The MIT group has used an algorithm to label GO nodes as too general or too specific based on the structure of the graph and the amount of annotation to terms. We are collaborating with them to examine their suggestions and modify the GO as needed.

Personnel

  • David Hill (GO)
  • Jane Lomax (GO)
  • Midori Harris (GO)
  • Chris Mungall (GO)
  • Judith Blake (GO)
  • Jonathan Liu (MIT)
  • Gil Alterovitz (MIT)
  • Marco Ramoni (MIT)
  • Ming Xiang (MIT)

Requirements:

  1. MIT group provides files to GO group for examination (done)
  2. GO group reviews file and makes notes about items to discuss (March 2)
  3. GO group conference call (March 8, 2007; 8:00 am PST, 11:00 am EST, 4:00 pm GMT)
  4. Face-to-Face meeting at MIT (March 16)

Documents (downloadable):