Content Meeting Participants Information: Difference between revisions

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http://www.geneontology.org/teaching_resources/tutorials/2007-04_italian_oboedit_tutorial.ppt
http://www.geneontology.org/teaching_resources/tutorials/2007-04_italian_oboedit_tutorial.ppt
* Very extensive help guide in English is included in the Application.
* Very extensive help guide in English is included in the Application.
Graphviewer<br>
To view the ontology as a graph, as in the picture above you will also need to install graphviz.
http://www.graphviz.org/
Read the section of the help guide called 'The Graph Viewer Plugin: Configuring the Plugin' for more details of you to set it up.

Revision as of 09:41, 30 July 2007

This page gives some introductory information for content meeting participants who may wish to carry on looking at the ontologies and thinking about annotation after the meeting is finished.

AmiGO

AmiGO is a browser that allows you to view the Gene Ontologies and annotations online.

http://amigo.geneontology.org/cgi-bin/amigo/go.cgi

Recent tutorial:
http://www.geneontology.org/teaching_resources/tutorials/2006-03_pombe-workshop_AmiGO_jlomax.ppt

OBO-Edit

All information on OBO-Edit can be found here:
http://oboedit.org/
  • Muscle meeting ontology file:

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/scratch/gene_ontology_cardio.obo The latest version is at the top of the list.

  • OBO-Edit tutorial in Italian:

http://www.geneontology.org/teaching_resources/tutorials/2007-04_italian_oboedit_tutorial.ppt

  • Very extensive help guide in English is included in the Application.
Graphviewer
To view the ontology as a graph, as in the picture above you will also need to install graphviz. http://www.graphviz.org/ Read the section of the help guide called 'The Graph Viewer Plugin: Configuring the Plugin' for more details of you to set it up.