Content Meeting Participants Information: Difference between revisions

Revision as of 08:21, 31 July 2007

Grading of Options

* Quick and Easy
**
***
****
***** Technical or Time Consuming.

The Gene Ontology Project Website

http://www.geneontology.org/

AmiGO *

AmiGO is a browser that allows you to view the Gene Ontologies and annotations online.

http://amigo.geneontology.org/cgi-bin/amigo/go.cgi

Recent tutorial:
http://www.geneontology.org/teaching_resources/tutorials/2006-03_pombe-workshop_AmiGO_jlomax.ppt

The Teaching Resources Page *

This page contains all of our recent teaching materials and so provides an easy way into learning about GO.
http://www.geneontology.org/GO.teaching.resources.shtml

Send Us Your Ideas

Option 1 *

You can send your ideas for new GO terms or annotations directly to us by e-mail:

Midori: midori at ebi.ac.uk
Jennifer: jdeegan at ebi.ac.uk

Or via the GO-Help system: go-help at geneontology.org

Option 2 ****

If you would like to send us requests for new GO terms, or if you have annotations contribute you can visit this page: http://www.geneontology.org/GO.sourceforge.links.shtml

Term requests: use 'GO curator requests tracker'.
Annotation ideas: use 'GO annotation tracker'.

OBO-Edit

All information on OBO-Edit can be found here:

http://oboedit.org/

Muscle meeting ontology file:

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/scratch/gene_ontology_cardio.obo The latest version is at the top of the list.

OBO-Edit tutorial in Italian:

http://www.geneontology.org/teaching_resources/tutorials/2007-04_italian_oboedit_tutorial.ppt

Very extensive help guide in English is included in the Application.

Graphviewer

To view the ontology as a graph, as in the picture above you will also need to install graphviz. 
http://www.graphviz.org/
Read the section of the help guide called 'The Graph Viewer Plugin: Configuring the Plugin' for more details of you to set it up.

@@ Line 1: / Line 1: @@
-This page gives some introductory information for content meeting participants who may wish to carry on looking at the ontologies and thinking about annotation after the meeting is finished.
+ '''Grading of Options'''<br>
+ * Quick and Easy
+ **
+ ***
+ ****
+ ***** Technical or Time Consuming.
 == The Gene Ontology Project Website ==
@@ Line 6: / Line 10: @@
 http://www.geneontology.org/
-==The Teaching Resources Page==
+==  AmiGO * ==
+[[Image:amigo.PNG]]
+AmiGO is a browser that allows you to view the Gene Ontologies and annotations online.
+http://amigo.geneontology.org/cgi-bin/amigo/go.cgi
+Recent tutorial:<br>
+http://www.geneontology.org/teaching_resources/tutorials/2006-03_pombe-workshop_AmiGO_jlomax.ppt
+== The Teaching Resources Page * ==
 This page contains all of our recent teaching materials and so provides an easy way into learning about GO.<br>
@@ Line 13: / Line 28: @@
 ==Send Us Your Ideas==
-If you would like to send us requests for new GO terms, or if you have annotations contribute you can visit this page:
-http://www.geneontology.org/GO.sourceforge.links.shtml
-  *Term requests: 'GO curator requests tracker'.
+==  Option 1 * ==
- *Annotation ideas: 'GO annotation tracker'.
+You can send your ideas for new GO terms or annotations directly to us by e-mail:
+Midori: midori at ebi.ac.uk<br>
+Jennifer: jdeegan at ebi.ac.uk
+Or via the GO-Help system: go-help at geneontology.org
+==  Option 2 **** ==
-== AmiGO ==
+If you would like to send us requests for new GO terms, or if you have annotations contribute you can visit this page:
+http://www.geneontology.org/GO.sourceforge.links.shtml
-[[Image:amigo.PNG]]
+ Term requests: use 'GO curator requests tracker'.
+ Annotation ideas: use 'GO annotation tracker'.
-AmiGO is a browser that allows you to view the Gene Ontologies and annotations online.
-http://amigo.geneontology.org/cgi-bin/amigo/go.cgi
-Recent tutorial:<br>
-http://www.geneontology.org/teaching_resources/tutorials/2006-03_pombe-workshop_AmiGO_jlomax.ppt
 == OBO-Edit ==