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To view the ontology as a graph, as in the picture above you will also need to install and configure graphviz. | To view the ontology as a graph, as in the picture above you will also need to install and configure graphviz. | ||
Here is an excerpt from the help guide to get you started: | Here is an excerpt from the help guide to get you started:<br> | ||
[[Image:config.png]] | [[Image:config.png]] |
Revision as of 08:42, 31 July 2007
Grading of Options
Quick and Easy Technical or Time-consuming
The Gene Ontology Project Website
AmiGO
AmiGO is a browser that allows you to view the Gene Ontologies and annotations online.
http://amigo.geneontology.org/cgi-bin/amigo/go.cgi
Recent tutorial:
http://www.geneontology.org/teaching_resources/tutorials/2006-03_pombe-workshop_AmiGO_jlomax.ppt
The Teaching Resources Page
This page contains all of our recent teaching materials and so provides an easy way into learning about GO.
http://www.geneontology.org/GO.teaching.resources.shtml
Send Us Your Ideas
You can send your ideas for new GO terms or annotations directly to us by e-mail:
Midori: midori at ebi.ac.uk
Jennifer: jdeegan at ebi.ac.uk
Or via the GO-Help system: go-help at geneontology.org
Alternatively you can enter your suggestions in the online tracker systems which are linked from:
http://www.geneontology.org/GO.sourceforge.links.shtml
For Term requests use 'GO curator requests tracker'.
For Annotation ideas use 'GO annotation tracker'.
The advantage of using this system is that you can then easily take part in online discussions amongst the GO Consortium staff, and you will be automatically notified as terms are added.
OBO-Edit
All information on OBO-Edit can be found here:
http://oboedit.org/
- Muscle meeting ontology file:
http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/scratch/gene_ontology_cardio.obo The latest version is at the top of the list.
- OBO-Edit tutorial in Italian:
http://www.geneontology.org/teaching_resources/tutorials/2007-04_italian_oboedit_tutorial.ppt
- Very extensive help guide in English is included in the Application.
Graphviewer
To view the ontology as a graph, as in the picture above you will also need to install and configure graphviz.