Content Meeting Participants Information: Difference between revisions

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== [[Image:star.png]] QuickGO  ==
== [[Image:star.png]] QuickGO  ==


Another GO browser, this time designed by GOA, the GO Annotation group at the EBI in Cambridge, UK.
Another GO browser, this time designed by GOA; the GO Annotation group at the EBI in Cambridge, UK.


[[Image:quickgo.png]]
[[Image:quickgo.png]]

Revision as of 10:00, 31 July 2007

Grading of Options
Quick and Easy Technical or Time-consuming


The Gene Ontology Project Website

http://www.geneontology.org/


AmiGO

AmiGO is the GO Consortium Browser that allows you to view the gene ontologies and annotations online.

http://amigo.geneontology.org/cgi-bin/amigo/go.cgi

Recent tutorial:
http://www.geneontology.org/teaching_resources/tutorials/2006-03_pombe-workshop_AmiGO_jlomax.ppt

AmiGO Help Guide: http://www.geneontology.org/amigo/help-front.shtml


QuickGO

Another GO browser, this time designed by GOA; the GO Annotation group at the EBI in Cambridge, UK.

The browser can be found here:

http://www.ebi.ac.uk/ego/

This browser is similar AmiGO but is very fast, and has an easy-access graph view similar to the one we have already seen in OBO-Edit.


Send Us Your Ideas

Option 1

You can send your ideas for new GO terms or annotations directly to us by e-mail:

Midori: midori at ebi.ac.uk
Jennifer: jdeegan at ebi.ac.uk

Or via the GO-Help system: go-help at geneontology.org

Option 2

Alternatively you can enter your suggestions in the online tracker systems which are linked from:
http://www.geneontology.org/GO.sourceforge.links.shtml

For Term requests use 'GO curator requests tracker'.
For Annotation ideas use 'GO annotation tracker'.

The advantage of using this system is that you can then easily take part in online discussions amongst the GO Consortium staff, and you will be automatically notified as terms are added.


OBO-Edit

The advantage of using OBO-Edit is that you can view and edit the ontology file that worked on at the muscle meeting long before our work is integrated into the live GO file.

*All information on OBO-Edit can be found here: http://oboedit.org/
*Download: http://oboedit.org/docs/html/The_Graph_Viewer_Plugin.htm
*Getting started: http://oboedit.org/docs/html/Getting_Started.htm
*Help Guide: http://oboedit.org/docs/index.html
*Graphviewer setup guide: http://oboedit.org/docs/html/The_Graph_Viewer_Plugin.htm
  • Muscle meeting ontology file - The latest version is at the top of the list:

http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/scratch/gene_ontology_cardio.obo

  • OBO-Edit tutorial in Italian:

http://www.geneontology.org/teaching_resources/tutorials/2007-04_italian_oboedit_tutorial.ppt


The Teaching Resources Page

This page contains all of our recent teaching materials and so provides an easy way into learning about GO.
http://www.geneontology.org/GO.teaching.resources.shtml