Contributes to: Difference between revisions

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== When NOT to Use 'contributes to' ==
== When NOT to Use 'contributes to' ==
* '''Prkag1 (protein kinase AMP-activated non-catalytic subunit gamma 1) [http://amigo.geneontology.org/amigo/gene_product/RGD:3388 RGD:3388 ]''': ''contributes_to AMP-activated protein kinase activity'' PMID:21399626 shows that the activation loop of the kinase domain is stabilized by the regulatory domain. The paper also shows that the regulatory subunit binds ADP, so it is really the subunit with a regulatory role.  
* '''Prkag1 (protein kinase AMP-activated non-catalytic subunit gamma 1) [http://amigo.geneontology.org/amigo/gene_product/RGD:3388 RGD:3388 ]''': PMID:21399626 shows that the activation loop of the kinase domain is stabilized by the regulatory domain. The paper also shows that the regulatory subunit binds ADP, so it is really the subunit with a regulatory role.  
** annotation should be to "GO:0019887 protein kinase regulator activity"
** annotation should be to "GO:0019887 protein kinase regulator activity"; Prkag1 does NOT contribute to AMP-activated protein kinase activity


== Quality Control Checks ==
== Quality Control Checks ==

Revision as of 10:10, 26 September 2019

Overview

Definition

Child Terms

None

Examples of Usage

  • eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex.
  • Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity.
  • ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity.

When NOT to Use 'contributes to'

  • Prkag1 (protein kinase AMP-activated non-catalytic subunit gamma 1) RGD:3388 : PMID:21399626 shows that the activation loop of the kinase domain is stabilized by the regulatory domain. The paper also shows that the regulatory subunit binds ADP, so it is really the subunit with a regulatory role.
    • annotation should be to "GO:0019887 protein kinase regulator activity"; Prkag1 does NOT contribute to AMP-activated protein kinase activity

Quality Control Checks

Relations Ontology

contributes to

Review Status

Last reviewed: September 9, 2019

Back to: Annotation Relations