Dec2007 ontology report
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Ontology Development & GO Editorial Office Report - December 2007
I. Ontology Development
- SourceForge
- Items opened: 100
- Items closed: 79 (also 2 duplicates deleted)
- GO Eds: 32
- MOD curators: 37 (details in Appendix 1)
- GO Ed/MOD collaborations: 10 (details in Appendix 2)
- Items still open: 299
- assigned, GO Eds: 40
- assigned, MOD curators: 55
- unassigned: 204
- Several SourceForge items resolved
- Content items in progress
- content meeting on lung development held December 5-6 (http://wiki.geneontology.org/index.php/Lung_Development)
- Work on sensu terms is almost finished; see http://gocwiki.geneontology.org/index.php/Meeting_Notes_3
- David and Tanya are keeping track of rules they've applied in working on Chris' file of "regulation of non-process" anomalies; the next thing is to define the 'regulates' relationship, and meet with Chris (Jan. 11th, afternoon; as usual, see http://gocwiki.geneontology.org/index.php/Regulation_Main_Page)
- Electron transport terms are being reorganized (David, Jen, Pascale, Jim, Michelle, and Debby Siegele)
- Various SourceForge items
- David is writing up the cardio meeting work for publication
- Erika and Jen are preparing a manuscript on the muscle content meeting, with help from Judy
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Jane on maternity leave
- Amelia visiting Berkeley database/software group
- OBO-Edit working group:
- Farewell to John! Nomi Harris filling in.
- A few more OBO-Edit 2.0 betas released
- Nomi and wg members focusing on documentation (updating and filling gaps in user guide)
- Advocacy/outreach group (Jane; Jen while Jane is away):
- Web presence
- Much testing of AmiGO release candidate
- Annotation
- Ongoing discussions about wiki-based annotation tools/pages
- Improving SOPs, involving Ref. Genome annotators and web presence group
- Community
- Usual gohelp traffic
- Web presence
- Anything else
- Current Protocols article update submitted (Midori, Judy)
- GO bibliography has 1713 entries
Appendix 1: MOD curators' SF items 1456229 David, Erika 1693852 David, Chris 1773424 Donghui 1773507 Donghui 1773515 Donghui, David 1790378 Tanya 1799275 Tanya 1823598 David 1824802 David, Tanya 1825022 David, Jim 1826264 David, Tanya 1826281 Donghui, David 1835267 David 1835499 Tanya 1836102 Donghui 1836131 Donghui 1836135 Donghui 1843544 Donghui 1843547 Donghui 1843557 Donghui 1843570 Donghui 1843683 Donghui 1843763 Donghui 1843775 Donghui 1844408 Donghui 1844416 Donghui 1844426 Donghui 1844444 Donghui 1846579 Tanya 1848185 David, Tanya 1849397 Tanya, David, Val 1849525 Donghui 1849534 Donghui, Rama, Karen C 1849536 Tanya 1849543 Donghui 1852820 Eurie 1852821 Eurie Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 1660160 Donghui 1789457 Colin, Ben 1826886 Peter, Kirill 1836964 Maria, Val 1841927 Peter 1842613 Peter 1842689 Val 1843766 Karen C 1844310 Donghui, Tanya 1845958 Karen C (Note: "MOD curator" is shorthand for any non-GO-Ed curator)