Evidence chain proposal: Difference between revisions
Jump to navigation
Jump to search
(Created page with " == Background == Existing evidence codes are insufficient to capture the provenance of many annotations which are inferred by a multiple steps, including sequential chains of s...") |
No edit summary |
||
Line 1: | Line 1: | ||
[[Category:Evidence Codes]] | |||
== Background == | == Background == | ||
Latest revision as of 16:05, 23 April 2014
Background
Existing evidence codes are insufficient to capture the provenance of many annotations which are inferred by a multiple steps, including sequential chains of steps, as in the case of inferences from inter ontology links (e.g. BP-CC links)
Proposal: evidence chain codes
We create new compositional evidence codes, for example, for inferences from inter-ontology links we would have codes such as:
* IMP-IOL * ISS-IOL
These would make use of a new primitive evidence code IOL (inferred from ontology link)
These would have ECO IDs, and would have OWL definitions such as:
IMP-IOL EquivalentTo: IOL and inferred_from some IMP
With column
There are various options for the With column - the chain could be represented as a comma-separated list of Withs from the primitive code.
E.g. for IMP-IOL the with field may contain the phenotype/allele ID followed by the GO ID