Example Solr Queries

Overview

This page has examples of various kinds of queries possible on the GO Solr document store (GOlr), Preliminary schema information can be found in the repo.

Usage

The current testing ground for GOlr is:

http://skewer.lbl.gov:8080/solr/

This is a naked Solr server; you can access it with any http client, including a web browser. In addition, there is an experimental version of GOOSE that can talk to Solr (select a Solr mirror from the list):

http://amigo2.berkeleybop.org/cgi-bin/amigo2/goose

This method is currently a little slower, but may make learning a little bit easier.

Example Queries

All documents (first 10)

URL

http://skewer.lbl.gov:8080/solr/select?qt=standard&fl=*%2Cscore&version=2.2&wt=json&rows=10&indent=on&q=*:*&start=0

GOOSE

q=*:*

All documents (first 20)

URL

http://skewer.lbl.gov:8080/solr/select?qt=standard&fl=*%2Cscore&version=2.2&wt=json&rows=20&indent=on&q=*:*&start=0

GOOSE

q=*:*
rows=20

All bioentities (50-100)

URL

http://skewer.lbl.gov:8080/solr/select?qt=standard&fl=*%2Cscore&version=2.2&wt=json&rows=50&indent=on&q=*:*&fq=document_category:%22bioentity%22&start=50

GOOSE

q=*:*
fq=document_category:"bioentity"
rows=50
start=50

IEA Annotations from TAIR (first 10)

URL

http://skewer.lbl.gov:8080/solr/select?qt=standard&fl=*%2Cscore&version=2.2&wt=json&rows=10&indent=on&q=*:*&fq=document_category:annotation&start=0

GOOSE

q=*:*
fq=document_category:annotation
fq=source:"TAIR"
fq=evidence_type:"IEA"

Annotations to both "macromolecule biosynthetic process" and "cellular response to stress" (first 10)

URL (facets displayed)

http://skewer.lbl.gov:8080/solr/select?qt=standard&indent=on&wt=json&version=2.2&rows=10&start=0&fl=*%2Cscore&facet=true&facet.field=document_category&facet.field=type&facet.field=evidence_type&facet.field=evidence_closure&facet.field=source&facet.field=taxon&facet.field=isa_partof_label_closure&facet.field=annotation_extension_class_label_closure&fq=&q=*:*&fq=document_category:"annotation"&fq=isa_partof_label_closure:"macromolecule biosynthetic process"&fq=isa_partof_label_closure:"cellular response to stress"

GOOSE (no facets shown)

q=*:*
fq=document_category:"annotation"
fq=isa_partof_label_closure:"macromolecule biosynthetic process"
fq=isa_partof_label_closure:"cellular response to stress"