FlyBase December 2010: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
(Created page with '=== 1. Staff working on GOC tasks === Susan Tweedie (GO curator) 1 FTE Stephanie Bunt (Literature curator) Peter McQuilton (Literature curator) Steven Marygold (Literature c…')
 
Line 18: Line 18:


Total number of staff working on GOC tasks approx 1.5 FTE; total funded by NIH GO grant 0.
Total number of staff working on GOC tasks approx 1.5 FTE; total funded by NIH GO grant 0.
=== 2. Annotation progress ===
==== Table showing progress in annotating Drosophila protein coding genes Nov 2009 - Nov 2010 (FB2009_09 - FB2010_09) ====
{| border="1"
|-
!
! Nov 09
! Nov 10
! % change
! % of total genes
|-
| Protein coding genes with any GO annotation || 10097 || 10325 || +2.3% || 74.7%
|-
| Protein coding genes with 1+ experimentally based term || 3511 || 3994 || +13.8% || 28.8%
|-
| Protein coding genes with other non IEA, ND evidence || 4159 || 3847 || -7.5% || 27.8%
|-
| Protein coding genes with only IEA || 1693 || 1713 || +1.2% || 12.4%
|-
| Protein coding genes with only ND || 734 || 771 || +4.8% || 5.6%
|-
|}
Note there are 13827 predicted protein coding genes in Drosophila (FlyBase release FB2010_09 - November 19th 2010)
GO annotation is available for an additional 340 genes that encode RNA products and 2085 genes that are not localised to the genome.

Revision as of 14:09, 23 November 2010

1. Staff working on GOC tasks

Susan Tweedie (GO curator) 1 FTE

Stephanie Bunt (Literature curator)

Peter McQuilton (Literature curator)

Steven Marygold (Literature curator)

Gillian Millburn (Literature curator)

Raymund Stefancsik (Literature curator)

Kathleen Falls (Developer)

Andy Schroeder (Developer)

Total number of staff working on GOC tasks approx 1.5 FTE; total funded by NIH GO grant 0.

2. Annotation progress

Table showing progress in annotating Drosophila protein coding genes Nov 2009 - Nov 2010 (FB2009_09 - FB2010_09)

Nov 09 Nov 10 % change % of total genes
Protein coding genes with any GO annotation 10097 10325 +2.3% 74.7%
Protein coding genes with 1+ experimentally based term 3511 3994 +13.8% 28.8%
Protein coding genes with other non IEA, ND evidence 4159 3847 -7.5% 27.8%
Protein coding genes with only IEA 1693 1713 +1.2% 12.4%
Protein coding genes with only ND 734 771 +4.8% 5.6%

Note there are 13827 predicted protein coding genes in Drosophila (FlyBase release FB2010_09 - November 19th 2010) GO annotation is available for an additional 340 genes that encode RNA products and 2085 genes that are not localised to the genome.