Difference between revisions of "Future newsletter items"

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==Items for February newsletter==
+
[[Category:GO News archived]]
 +
==Items for August newsletter==
  
* Announcement of new disjoint_from tags in gene_ontology.obo file (Jane)
+
*Genes of the quarter: Excision-repair proteins (already written)
***DO WE REALLY WANT TO DO THIS? There are still a few disjoint violations in the ontology.
 
** also mention that SO has them now too between the top nodes and between region and junction
 
  
* Ontology development
+
*Announcement of new column in GA files (need a volunteer to write this)
** The new regulation relationships (Tanya and David)
 
** Other developments (topics addressed/done in January?)
 
  
*The annotation workshop that Linda Hannick is running.
+
*Announce change of date for inter-ontology links?
  
==Items for May newsletter==
+
*ID mapping resources
* AmiGO release
+
**see email thread on GOfriends, started [http://fafner.stanford.edu/pipermail/gofriends/2008-May/thread.html#1533 May 14 2008]
Starting in March 2008, the following enhancements and new features were made available in
 
AmiGO (http://amigo.geneontology.org),
 
the web application that allows browsing and visualization of the ontologies and annotations from multiple species:
 
  Better search interface and results
 
  Result ranking
 
  More and improved download options
 
  Visual enhancements (graphs, bar charts, etc.)
 
  Term Enrichment
 
  Slimmer
 
  
* Orthology establishment for the Reference Genomes MODs genes - Princeton group
+
(below are leftovers from previously suggested topics)
  
 
==Items for future newsletters==
 
==Items for future newsletters==
 +
 +
*Midori has suggested we have a whole newsletter devoted to x-products. We haven't yet decided whether this will replace or be in addition to the regular newsletter release:
 +
 +
Dear newsletter-ers,                                                                                                 
 +
                                                                                                                     
 +
I've had an idea for a future newsletter: how about a special issue                                                   
 +
devoted entirely to cross-products? Chris has generated a lot of sets to                                             
 +
review lately, and we'll deploy them in the live GO before too long.                                                 
 +
Keeping our users fully informed will take more than an ordinary article                                             
 +
in an ordinary newsletter.                                                                                           
 +
                                                                                                                     
 +
Some possible articles:                                                                                               
 +
                                                                                                                     
 +
- What are cross-products, and how do we represent them in GO files?                                                 
 +
(Chris?)                                                                                                             
 +
                                                                                                                     
 +
- What do we gain by using xps? (Midori & David?)                                                                     
 +
                                                                                                                     
 +
- What GO terms and other ontologies will be used in xps? (Midori, David,                                             
 +
Chris?)                                                                                                               
 +
                                                                                                                     
 +
- What will xps look like in AmiGO? (Seth, Amelia?) (maybe a pretty                                                   
 +
screenshot??)
 +
 +
* Orthology establishment for the Reference Genomes MODs genes - Princeton group
  
 
==Items suggested for newsletters, but better somewhere else==
 
==Items suggested for newsletters, but better somewhere else==

Latest revision as of 07:04, 12 April 2019

Items for August newsletter

  • Genes of the quarter: Excision-repair proteins (already written)
  • Announcement of new column in GA files (need a volunteer to write this)
  • Announce change of date for inter-ontology links?
  • ID mapping resources

(below are leftovers from previously suggested topics)

Items for future newsletters

  • Midori has suggested we have a whole newsletter devoted to x-products. We haven't yet decided whether this will replace or be in addition to the regular newsletter release:
Dear newsletter-ers,                                                                                                   
                                                                                                                      
I've had an idea for a future newsletter: how about a special issue                                                    
devoted entirely to cross-products? Chris has generated a lot of sets to                                               
review lately, and we'll deploy them in the live GO before too long.                                                   
Keeping our users fully informed will take more than an ordinary article                                               
in an ordinary newsletter.                                                                                             
                                                                                                                      
Some possible articles:                                                                                                
                                                                                                                      
- What are cross-products, and how do we represent them in GO files?                                                   
(Chris?)                                                                                                               
                                                                                                                      
- What do we gain by using xps? (Midori & David?)                                                                      
                                                                                                                      
- What GO terms and other ontologies will be used in xps? (Midori, David,                                              
Chris?)                                                                                                                
                                                                                                                      
- What will xps look like in AmiGO? (Seth, Amelia?) (maybe a pretty                                                    
screenshot??)
  • Orthology establishment for the Reference Genomes MODs genes - Princeton group

Items suggested for newsletters, but better somewhere else

  • Standards for GO data in publications

New task for Group

  • Obtain an ISSN for the Newsletter,[1]