Difference between revisions of "Future newsletter items"

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==Items for November newsletter==
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[[Category:GO News archived]]
 +
==Items for August newsletter==
  
* Requirements for With information when using certain evidence codes (evidence code committee)
+
*Genes of the quarter: Excision-repair proteins (already written)
* Mention availability of the Annotation SOP/Flowcharts
 
* Muscle and cardio content meeting work
 
  
From Jen's email:
+
*Announcement of new column in GA files (need a volunteer to write this)
There have recently been two content meetings to improve the
 
cardiovascular physiology and muscle-related parts of the GO graph. The
 
cardiovascular physiology meeting was held by RGD at the Medical College
 
of Wisconsin, and the muscle meeting was held by the TRAIT database at
 
the University of Padova in Italy.
 
 
In the cardiovascular physiology effort 119 new terms were added and 23
 
terms were modified.
 
Further details of the work can be found at
 
http://gocwiki.geneontology.org/index.php/Cardiovascular_physiology/development
 
 
In the muscle effort 159 new terms were added and 57 terms were modified.
 
Further details of the work can be found at
 
http://wiki.geneontology.org/index.php/Muscle_Development
 
  
* Cardiovascular Gene Ontology Annotation Initiative
+
*Announce change of date for inter-ontology links?
A new University College London based Cardiovascular Gene Ontology Annotation
 
initiative started on 1 November 2007. The project is supported by the British Heart
 
Foundation, and aims to prioritize the annotation of human genes associated with
 
the cardiovascular system, in order to provide full Gene Ontology annotation to genes
 
associated with cardiovascular processes. For more information, please visit this URL:
 
http://www.ucl.ac.uk/medicine/cardiovascular-genetics/geneontology.html
 
  
* GOA would like to announce their new Swiss-Prot subcellular location2GO (SPSL2GO) electronic mapping which will be in the next release.
+
*ID mapping resources
 +
**see email thread on GOfriends, started [http://fafner.stanford.edu/pipermail/gofriends/2008-May/thread.html#1533 May 14 2008]
  
Text from Rachael:
+
(below are leftovers from previously suggested topics)
New Subcellular Location2GO mapping (spsl2go).
 
The GOA group are pleased to announce that in collaboration with Serenella Ferro Rojas
 
of the Swiss Institute of Bioinformatics, we are able to offer a new external database
 
mapping file. Subcellular Location terms from the Comment (CC) lines of UniProtKB entries
 
have been manually mapped to GO terms. The new mapping has been applied electronically
 
to enhance the electronic (IEA coded) GO annotation in our latest GOA release. This mapping
 
has provided XXXXXXX new associations with XXXXXXX proteins.
 
The spsl2go mapping file is available from the GOA ftp site
 
(ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/spsl2go)
 
and the Gene Ontology Consortium website
 
(http://www.geneontology.org/external2go/spsl2go).
 
The GO reference for this mapping is GO_REF:0000023.
 
  
 
==Items for future newsletters==
 
==Items for future newsletters==
  
* Announcement of new disjoint_from tags in gene_ontology.obo file (Jane)
+
*Midori has suggested we have a whole newsletter devoted to x-products. We haven't yet decided whether this will replace or be in addition to the regular newsletter release:
** also mention that SO has them now too between the top nodes and between region and junction
+
 
 +
Dear newsletter-ers,                                                                                                 
 +
                                                                                                                     
 +
I've had an idea for a future newsletter: how about a special issue                                                   
 +
devoted entirely to cross-products? Chris has generated a lot of sets to                                             
 +
review lately, and we'll deploy them in the live GO before too long.                                                  
 +
Keeping our users fully informed will take more than an ordinary article                                             
 +
in an ordinary newsletter.                                                                                           
 +
                                                                                                                     
 +
Some possible articles:                                                                                               
 +
                                                                                                                     
 +
- What are cross-products, and how do we represent them in GO files?                                                 
 +
(Chris?)                                                                                                              
 +
                                                                                                                     
 +
- What do we gain by using xps? (Midori & David?)                                                                     
 +
                                                                                                                     
 +
- What GO terms and other ontologies will be used in xps? (Midori, David,                                             
 +
Chris?)                                                                                                               
 +
                                                                                                                     
 +
- What will xps look like in AmiGO? (Seth, Amelia?) (maybe a pretty                                                   
 +
screenshot??)
 +
 
 +
* Orthology establishment for the Reference Genomes MODs genes - Princeton group
  
 
==Items suggested for newsletters, but better somewhere else==
 
==Items suggested for newsletters, but better somewhere else==

Latest revision as of 06:04, 12 April 2019

Items for August newsletter

  • Genes of the quarter: Excision-repair proteins (already written)
  • Announcement of new column in GA files (need a volunteer to write this)
  • Announce change of date for inter-ontology links?
  • ID mapping resources

(below are leftovers from previously suggested topics)

Items for future newsletters

  • Midori has suggested we have a whole newsletter devoted to x-products. We haven't yet decided whether this will replace or be in addition to the regular newsletter release:
Dear newsletter-ers,                                                                                                   
                                                                                                                      
I've had an idea for a future newsletter: how about a special issue                                                    
devoted entirely to cross-products? Chris has generated a lot of sets to                                               
review lately, and we'll deploy them in the live GO before too long.                                                   
Keeping our users fully informed will take more than an ordinary article                                               
in an ordinary newsletter.                                                                                             
                                                                                                                      
Some possible articles:                                                                                                
                                                                                                                      
- What are cross-products, and how do we represent them in GO files?                                                   
(Chris?)                                                                                                               
                                                                                                                      
- What do we gain by using xps? (Midori & David?)                                                                      
                                                                                                                      
- What GO terms and other ontologies will be used in xps? (Midori, David,                                              
Chris?)                                                                                                                
                                                                                                                      
- What will xps look like in AmiGO? (Seth, Amelia?) (maybe a pretty                                                    
screenshot??)
  • Orthology establishment for the Reference Genomes MODs genes - Princeton group

Items suggested for newsletters, but better somewhere else

  • Standards for GO data in publications

New task for Group

  • Obtain an ISSN for the Newsletter,[1]