GAF file QC
From GO Public
Revision as of 16:31, 8 January 2010 by Girlwithglasses (Talk | contribs)
The following quality control checks should be performed before submitting a GAF file to the Gene Ontology Consortium.
Remove any duplicate lines in the file (this can be easily accomplished by performing sort -u on Unix)
Ensure all external entities referenced in the file (e.g. in the with/from column) use the correct database prefix, as specified in the xref abbreviations file
