GO-CAM Conference Call - 2019-01-15: Difference between revisions
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***Annotation of protein complexes and their respective members | ***Annotation of protein complexes and their respective members | ||
****When to annotate to a complex vs making each individual MF just 'part of' the same process? | ****When to annotate to a complex vs making each individual MF just 'part of' the same process? | ||
****When to annotate to the same 'instance' of a biological process vs different 'instances'? | ***Instance-level representation | ||
****Creating a model for one species when the evidence derives from experiments in multiple species | ***When to annotate to the same 'instance' of a biological process vs different 'instances'? | ||
***Modeling from multiple species | |||
***Creating a model for one species when the evidence derives from experiments in multiple species | |||
**Import of Reactome pathways | **Import of Reactome pathways | ||
***Glycolysis | ***Glycolysis |
Revision as of 21:24, 14 January 2019
Meeting URL
Agenda
- From 2019-01-07 annotation conference call:
- Import of whole genomes
- Working meeting at Berkeley the end of this month
- WormBase and MGI will be the first genome annotation sets to be imported
- gp2term relations
- evidence and annotation extensions
- search, display, editing
- gpad output
- overall data flow
- documentation
- Continued discussion of modeling questions
- Annotation of protein complexes and their respective members
- When to annotate to a complex vs making each individual MF just 'part of' the same process?
- Instance-level representation
- When to annotate to the same 'instance' of a biological process vs different 'instances'?
- Modeling from multiple species
- Creating a model for one species when the evidence derives from experiments in multiple species
- Annotation of protein complexes and their respective members
- Import of Reactome pathways
- Glycolysis
- MAPK
- BMP
- Wnt
- ER-UPR
- Model manipulation
- Generation and use of templates
- Merging models
- Copying and/or re-using annotations
- Import of whole genomes
Minutes
- On call: