GO-CAM Conference Call - 2019-01-15: Difference between revisions
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*On call: Barbara, David, Dustin, Elena, Giulia, Harold, Kimberly, Laurent-Philippe, Marie-Claire, Petra, Rob, Ruth, Sabrina, Seth | *On call: Barbara, Chris, David, Dustin, Elena, Giulia, Harold, Kimberly, Laurent-Philippe, Marie-Claire, Petra, Rob, Ruth, Sabrina, Seth | ||
Revision as of 12:02, 15 January 2019
Meeting URL
Agenda
- From 2019-01-07 annotation conference call:
- Import of whole genomes
- Working meeting at Berkeley the end of this month
- WormBase and MGI will be the first genome annotation sets to be imported
- gp2term relations
- evidence and annotation extensions
- search, display, editing
- gpad output
- overall data flow
- documentation
- Continued discussion of modeling questions
- Annotation of protein complexes and their respective members
- When to annotate to a complex vs making each individual MF just 'part of' the same process?
- Nuclear Pores Regulate Muscle Development and Maintenance by Assembling a Localized Mef2C Complex
- Instance-level representation
- When to annotate to the same 'instance' of a biological process vs different 'instances'?
- Implications for curator workflow
- Modeling from multiple species
- Creating a model for one species when the evidence derives from experiments in multiple species
- Creating models for processes that involve more than one species
- Annotation of protein complexes and their respective members
- Import of Reactome pathways
- Glycolysis
- MAPK
- BMP
- Wnt
- ER-UPR
- GPI synthesis
- Size limitations and delineation of 'models'
- How to 'stitch' or connect large models in a consistent manner that allows us to represent dependencies (upstream, downstream) in a biologically meaningful way that is also computationally amenable
- Model manipulation
- Generation and use of templates
- Merging models
- Copying and/or re-using annotations
- Import of whole genomes
Minutes
- On call: Barbara, Chris, David, Dustin, Elena, Giulia, Harold, Kimberly, Laurent-Philippe, Marie-Claire, Petra, Rob, Ruth, Sabrina, Seth