GO-CAM Conference Call - 2019-05-21: Difference between revisions
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** Implemented imports of With/From | ** Implemented imports of With/From | ||
** Re-visiting the rule for modeling BP 'regulation of MF' with has_regulation_target extension | ** Re-visiting the rule for modeling BP 'regulation of MF' with has_regulation_target extension | ||
** Additional annotation extensions coming on board | |||
* Track issues on [https://github.com/geneontology/gocamgen github/gocamgen] | * Track issues on [https://github.com/geneontology/gocamgen github/gocamgen] | ||
Revision as of 09:03, 21 May 2019
Call Information
- See GO's Google calendar for Zoom URL
- email Kimberly if you need access to the GO's Google calendar
Agenda
Annotation Imports
- Status update on MGI and WB annotation imports
- Implemented imports of With/From
- Re-visiting the rule for modeling BP 'regulation of MF' with has_regulation_target extension
- Additional annotation extensions coming on board
- Track issues on github/gocamgen
Modeling Questions
- From Sabrina on go-annotation gitter:
- "caspy2 binds directly to lipopolysaccharide, resulting in caspy2 oligomerization, which is critical for pyroptosis" ([https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6076302 PMID:30076291})
- I started a GOCAM model, but I am not sure it is correct
- Summary figure from paper
- Related question on modeling activities that influence dimerization state of another protein
- Role of heat shock proteins in initiating C. elegans IRE1-ER UPR
- See: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423427/figure/F3/