GO-CAM Curation: Difference between revisions
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= Preamble = | |||
GO-CAM models are based on the semantic annotation and combination of biological facts. Each fact or statement corresponds to a standard GO Annotation, that is a Gene associated to a GO-Term. To read more about standard GO annotations, <span class="plainlinks">[http://geneontology.org/page/go-annotations click here]</span>. | |||
GO-CAM relies on the <span class="plainlinks">[http://geneontology.org/page/ontology-documentation Gene Ontology]</span> to define a controlled set of vocabulary and enable curators to create structured biological facts, also called annotations. GO-CAM combines those single biological facts to describe and define larger biological processes. Each biological fact can be written as.a triplet <subject - predicate - object> and a model, as a collection of triplets, can be stored in TTL file. | |||
The curators use the platform <span class="plainlinks">[http://noctua.geneontology.org Noctua]</span> to create these GO-CAM models. Noctua is the front-end, currently written with <span class="plainlinks">[https://github.com/janl/mustache.js/ mustache]</span> and <span class="plainlinks">[https://github.com/kltm/pup-tent pup-tent], and allows for the creation of workbenches (end-user UI to access and manipulate the models in different ways) | |||
= First Steps = | = First Steps = | ||
Revision as of 19:22, 14 March 2018
Preamble
GO-CAM models are based on the semantic annotation and combination of biological facts. Each fact or statement corresponds to a standard GO Annotation, that is a Gene associated to a GO-Term. To read more about standard GO annotations, click here.
GO-CAM relies on the Gene Ontology to define a controlled set of vocabulary and enable curators to create structured biological facts, also called annotations. GO-CAM combines those single biological facts to describe and define larger biological processes. Each biological fact can be written as.a triplet <subject - predicate - object> and a model, as a collection of triplets, can be stored in TTL file.
The curators use the platform Noctua to create these GO-CAM models. Noctua is the front-end, currently written with mustache and pup-tent, and allows for the creation of workbenches (end-user UI to access and manipulate the models in different ways)
First Steps
Curators should start with this Quick Start Guide
To dive deeper into the creation and curation of GO-CAM Models, curators are encouraged to follow this more Complete Guide.
Additional Resources