GO-CAM July 12th, 2017: Difference between revisions
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**Noctua ->Workbenches->Annotation Preview | **Noctua ->Workbenches->Annotation Preview | ||
**Noctua ->Model->Export GPAD | **Noctua ->Model->Export GPAD | ||
**Noctua->Jenkins | **Noctua->Jenkins (http://build.berkeleybop.org/job/export-lego-to-gpad-sparql/lastSuccessfulBuild/artifact/legacy/gpad) | ||
*Handling evidence properly | *Handling evidence properly |
Revision as of 09:23, 12 July 2017
Zoom URL
https://stanford.zoom.us/j/679970729
Agenda
Update on Proposal for a Tabular Editing Interface
Priority list
- Viewing annotations in GPAD format - are all being generated by the same protocol?
- Noctua ->Workbenches->Annotation Preview
- Noctua ->Model->Export GPAD
- Noctua->Jenkins (http://build.berkeleybop.org/job/export-lego-to-gpad-sparql/lastSuccessfulBuild/artifact/legacy/gpad)
- Handling evidence properly
- Complex model resolution to specify gene products along with evidence.
- evidence test: transferases - protein localization - differentiation
- Notch signaling - Part 1
- Karen's concerns regarding evidence usage and mapping
- Complex model resolution to specify gene products along with evidence.
- Handling groups as output in the GPAD file.
- Creating biological processes to generate regulation annotations.
- Generating a tabular interface
- Filtering GPAD annotations
- Regulation annotations when a named class exists
- Causal annotations to molecular functions
- Curators should evaluate their workflow for areas where we can improve efficiency - high priority
- Import existing CC and BP annotations
- Documentation
Minutes
- On call: